Cluster: HRGMv2_0285_CGC20
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 6
- Substrate: xylan
- Genome ID: HRGMv2_0285
- CGC Family ID: CGCFAM_00238
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0285_7 | HRGMv2_0285_7_79 | 101114 | 101893 | + | 1.B.44.1.2 |
| CAZyme | HRGMv2_0285_7 | HRGMv2_0285_7_80 | 101919 | 104513 | - | GH3 |
| pfam | HRGMv2_0285_7 | HRGMv2_0285_7_81 | 104786 | 106666 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0285_7 | HRGMv2_0285_7_82 | 106719 | 109991 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | HRGMv2_0285_7 | HRGMv2_0285_7_83 | 110263 | 110388 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_0285_7 | HRGMv2_0285_7_84 | 110511 | 114584 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_0285_7 | HRGMv2_0285_7_85 | 114641 | 116545 | - | CE1 | CE6 |
| sulfatase | HRGMv2_0285_7 | HRGMv2_0285_7_86 | 116603 | 118042 | - | S1_8 |
| CAZyme | HRGMv2_0285_7 | HRGMv2_0285_7_87 | 118252 | 119751 | - | GH43_16 |
| CAZyme | HRGMv2_0285_7 | HRGMv2_0285_7_88 | 120251 | 122479 | - | GH10 |
| pfam | HRGMv2_0285_7 | HRGMv2_0285_7_89 | 122516 | 123592 | - | BT_3987-like_N | DUF5627 |
| pfam | HRGMv2_0285_7 | HRGMv2_0285_7_90 | 123611 | 125413 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0285_7 | HRGMv2_0285_7_91 | 125436 | 128303 | - | 1.B.14.6.1 |
| pfam | HRGMv2_0285_7 | HRGMv2_0285_7_92 | 128340 | 130331 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0285_7 | HRGMv2_0285_7_93 | 130350 | 133481 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_0285_7 | HRGMv2_0285_7_94 | 133618 | 135015 | - | GH5_21 |
| TF | HRGMv2_0285_7 | HRGMv2_0285_7_95 | 135545 | 139627 | + | HTH_AraC |
| CAZyme | HRGMv2_0285_7 | HRGMv2_0285_7_96 | 139773 | 141497 | + | CBM91 | GH43_12 |
Gene ID: HRGMv2_0285_7_79
Type: TC
Location: 101114 - 101893 (+)
Type: TC
Location: 101114 - 101893 (+)
Gene ID: HRGMv2_0285_7_80
Type: CAZyme
Location: 101919 - 104513 (-)
Type: CAZyme
Location: 101919 - 104513 (-)
Gene ID: HRGMv2_0285_7_81
Type: pfam
Location: 104786 - 106666 (-)
Type: pfam
Location: 104786 - 106666 (-)
Gene ID: HRGMv2_0285_7_82
Type: TC
Location: 106719 - 109991 (-)
Type: TC
Location: 106719 - 109991 (-)
Gene ID: HRGMv2_0285_7_83
Type:
Location: 110263 - 110388 (+)
Type:
Location: 110263 - 110388 (+)
Gene ID: HRGMv2_0285_7_84
Type: TF
Location: 110511 - 114584 (+)
Type: TF
Location: 110511 - 114584 (+)
Gene ID: HRGMv2_0285_7_85
Type: CAZyme
Location: 114641 - 116545 (-)
Type: CAZyme
Location: 114641 - 116545 (-)
Gene ID: HRGMv2_0285_7_86
Type: sulfatase
Location: 116603 - 118042 (-)
Type: sulfatase
Location: 116603 - 118042 (-)
Gene ID: HRGMv2_0285_7_87
Type: CAZyme
Location: 118252 - 119751 (-)
Type: CAZyme
Location: 118252 - 119751 (-)
Gene ID: HRGMv2_0285_7_88
Type: CAZyme
Location: 120251 - 122479 (-)
Type: CAZyme
Location: 120251 - 122479 (-)
Gene ID: HRGMv2_0285_7_89
Type: pfam
Location: 122516 - 123592 (-)
Type: pfam
Location: 122516 - 123592 (-)
Gene ID: HRGMv2_0285_7_90
Type: pfam
Location: 123611 - 125413 (-)
Type: pfam
Location: 123611 - 125413 (-)
Gene ID: HRGMv2_0285_7_91
Type: TC
Location: 125436 - 128303 (-)
Type: TC
Location: 125436 - 128303 (-)
Gene ID: HRGMv2_0285_7_92
Type: pfam
Location: 128340 - 130331 (-)
Type: pfam
Location: 128340 - 130331 (-)
Gene ID: HRGMv2_0285_7_93
Type: TC
Location: 130350 - 133481 (-)
Type: TC
Location: 130350 - 133481 (-)
Gene ID: HRGMv2_0285_7_94
Type: CAZyme
Location: 133618 - 135015 (-)
Type: CAZyme
Location: 133618 - 135015 (-)
Gene ID: HRGMv2_0285_7_95
Type: TF
Location: 135545 - 139627 (+)
Type: TF
Location: 135545 - 139627 (+)
Gene ID: HRGMv2_0285_7_96
Type: CAZyme
Location: 139773 - 141497 (+)
Type: CAZyme
Location: 139773 - 141497 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp000436035
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0285_7_93 | vegetarian > vegan | 1.36746 | 0.00409 |
| HRGMv2_0285_7_94 | vegetarian > omnivore | 1.45552 | 0.01622 |
| HRGMv2_0285_7_94 | vegetarian > vegan | 3.07039 | 0.00409 |