Cluster: HRGMv2_0285_CGC13
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 6
- Substrate: beta-glucan
- Genome ID: HRGMv2_0285
- CGC Family ID: CGCFAM_00101
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0285_5 | HRGMv2_0285_5_95 | 116173 | 119793 | - | GH2 |
| CAZyme | HRGMv2_0285_5 | HRGMv2_0285_5_96 | 119829 | 122000 | - | GH3 |
| CAZyme | HRGMv2_0285_5 | HRGMv2_0285_5_97 | 122024 | 124477 | - | GH2 |
| NULL(UNKNOWN) | HRGMv2_0285_5 | HRGMv2_0285_5_98 | 124609 | 125571 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0285_5 | HRGMv2_0285_5_99 | 125601 | 127115 | - | GH5_4 |
| pfam | HRGMv2_0285_5 | HRGMv2_0285_5_100 | 127121 | 128644 | - | SGBP_B_XBD |
| pfam | HRGMv2_0285_5 | HRGMv2_0285_5_101 | 128648 | 130282 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0285_5 | HRGMv2_0285_5_102 | 130295 | 133447 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_0285_5 | HRGMv2_0285_5_103 | 133467 | 135464 | - | GH97 |
| TF | HRGMv2_0285_5 | HRGMv2_0285_5_104 | 135835 | 139770 | + | HTH_AraC |
| CAZyme | HRGMv2_0285_5 | HRGMv2_0285_5_105 | 140278 | 143082 | - | GH2 |
Gene ID: HRGMv2_0285_5_95
Type: CAZyme
Location: 116173 - 119793 (-)
Type: CAZyme
Location: 116173 - 119793 (-)
Gene ID: HRGMv2_0285_5_96
Type: CAZyme
Location: 119829 - 122000 (-)
Type: CAZyme
Location: 119829 - 122000 (-)
Gene ID: HRGMv2_0285_5_97
Type: CAZyme
Location: 122024 - 124477 (-)
Type: CAZyme
Location: 122024 - 124477 (-)
Gene ID: HRGMv2_0285_5_98
Type:
Location: 124609 - 125571 (-)
Type:
Location: 124609 - 125571 (-)
Gene ID: HRGMv2_0285_5_99
Type: CAZyme
Location: 125601 - 127115 (-)
Type: CAZyme
Location: 125601 - 127115 (-)
Gene ID: HRGMv2_0285_5_100
Type: pfam
Location: 127121 - 128644 (-)
Type: pfam
Location: 127121 - 128644 (-)
Gene ID: HRGMv2_0285_5_101
Type: pfam
Location: 128648 - 130282 (-)
Type: pfam
Location: 128648 - 130282 (-)
Gene ID: HRGMv2_0285_5_102
Type: TC
Location: 130295 - 133447 (-)
Type: TC
Location: 130295 - 133447 (-)
Gene ID: HRGMv2_0285_5_103
Type: CAZyme
Location: 133467 - 135464 (-)
Type: CAZyme
Location: 133467 - 135464 (-)
Gene ID: HRGMv2_0285_5_104
Type: TF
Location: 135835 - 139770 (+)
Type: TF
Location: 135835 - 139770 (+)
Gene ID: HRGMv2_0285_5_105
Type: CAZyme
Location: 140278 - 143082 (-)
Type: CAZyme
Location: 140278 - 143082 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp000436035
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.