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Cluster: HRGMv2_0279_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0279_2 HRGMv2_0279_2_31 38119 40848 - 1.B.14.8.4
pfam HRGMv2_0279_2 HRGMv2_0279_2_32 40884 42152 - Metallophos
CAZyme HRGMv2_0279_2 HRGMv2_0279_2_33 42364 43521 + GT1
STP HRGMv2_0279_2 HRGMv2_0279_2_34 43641 44291 + HhH-GPD
TC HRGMv2_0279_2 HRGMv2_0279_2_35 44313 45875 + 3.A.11.1.1
pfam HRGMv2_0279_2 HRGMv2_0279_2_36 45818 47581 - DHOR
peptidase HRGMv2_0279_2 HRGMv2_0279_2_37 47672 49009 - M75.UPW
TC HRGMv2_0279_2 HRGMv2_0279_2_38 49049 50344 - 1.B.3.1.7
Gene ID: HRGMv2_0279_2_31
Type: TC
Location: 38119 - 40848 (-)
Gene ID: HRGMv2_0279_2_32
Type: pfam
Location: 40884 - 42152 (-)
Gene ID: HRGMv2_0279_2_33
Type: CAZyme
Location: 42364 - 43521 (+)
Gene ID: HRGMv2_0279_2_34
Type: STP
Location: 43641 - 44291 (+)
Gene ID: HRGMv2_0279_2_35
Type: TC
Location: 44313 - 45875 (+)
Gene ID: HRGMv2_0279_2_36
Type: pfam
Location: 45818 - 47581 (-)
Gene ID: HRGMv2_0279_2_37
Type: peptidase
Location: 47672 - 49009 (-)
Gene ID: HRGMv2_0279_2_38
Type: TC
Location: 49049 - 50344 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0279_2_31 vegetarian > vegan 3.93183 0.02180

🧭 Explore Read Mapping of CGC

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