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Cluster: HRGMv2_0279_CGC36

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0279_39 HRGMv2_0279_39_4 5171 6634 + GH76
TC HRGMv2_0279_39 HRGMv2_0279_39_5 6657 9794 + 1.B.14.6.1
pfam HRGMv2_0279_39 HRGMv2_0279_39_6 9859 11916 + SusD_RagB | SusD-like_3
pfam HRGMv2_0279_39 HRGMv2_0279_39_7 11976 12821 + DUF3823
CAZyme HRGMv2_0279_39 HRGMv2_0279_39_8 12895 14406 + GH125
CAZyme HRGMv2_0279_39 HRGMv2_0279_39_9 14521 16806 + GH92
NULL(UNKNOWN) HRGMv2_0279_39 HRGMv2_0279_39_10 17102 17260 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0279_39 HRGMv2_0279_39_11 17455 19359 - 1.A.33.1.2
pfam HRGMv2_0279_39 HRGMv2_0279_39_12 19621 20835 + PagL
TC HRGMv2_0279_39 HRGMv2_0279_39_13 20789 22051 - 2.A.23.2.12
CAZyme HRGMv2_0279_39 HRGMv2_0279_39_14 22455 24239 + GH123
TC HRGMv2_0279_39 HRGMv2_0279_39_15 24547 25845 - 2.A.40.7.2
Gene ID: HRGMv2_0279_39_4
Type: CAZyme
Location: 5171 - 6634 (+)
Gene ID: HRGMv2_0279_39_5
Type: TC
Location: 6657 - 9794 (+)
Gene ID: HRGMv2_0279_39_6
Type: pfam
Location: 9859 - 11916 (+)
Gene ID: HRGMv2_0279_39_7
Type: pfam
Location: 11976 - 12821 (+)
Gene ID: HRGMv2_0279_39_8
Type: CAZyme
Location: 12895 - 14406 (+)
Gene ID: HRGMv2_0279_39_9
Type: CAZyme
Location: 14521 - 16806 (+)
Gene ID: HRGMv2_0279_39_10
Type:
Location: 17102 - 17260 (-)
Gene ID: HRGMv2_0279_39_11
Type: TC
Location: 17455 - 19359 (-)
Gene ID: HRGMv2_0279_39_12
Type: pfam
Location: 19621 - 20835 (+)
Gene ID: HRGMv2_0279_39_13
Type: TC
Location: 20789 - 22051 (-)
Gene ID: HRGMv2_0279_39_14
Type: CAZyme
Location: 22455 - 24239 (+)
Gene ID: HRGMv2_0279_39_15
Type: TC
Location: 24547 - 25845 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0279_39_10 vegetarian > vegan 15.14537 0.01271

🧭 Explore Read Mapping of CGC

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