Cluster: HRGMv2_0279_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0279
- CGC Family ID: CGCFAM_00241
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0279_2 | HRGMv2_0279_2_6 | 3906 | 5303 | - | 2.A.2.3.3 |
| CAZyme | HRGMv2_0279_2 | HRGMv2_0279_2_7 | 5458 | 6630 | - | GH130_1 |
| CAZyme | HRGMv2_0279_2 | HRGMv2_0279_2_8 | 6640 | 7701 | - | GH26 |
| CAZyme | HRGMv2_0279_2 | HRGMv2_0279_2_9 | 7734 | 9005 | - | CE7 |
| CAZyme | HRGMv2_0279_2 | HRGMv2_0279_2_10 | 9317 | 10465 | + | GH26 |
| NULL(UNKNOWN) | HRGMv2_0279_2 | HRGMv2_0279_2_11 | 10501 | 11652 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0279_2 | HRGMv2_0279_2_12 | 11675 | 14878 | + | 1.B.14.6.1 |
Gene ID: HRGMv2_0279_2_6
Type: TC
Location: 3906 - 5303 (-)
Type: TC
Location: 3906 - 5303 (-)
Gene ID: HRGMv2_0279_2_7
Type: CAZyme
Location: 5458 - 6630 (-)
Type: CAZyme
Location: 5458 - 6630 (-)
Gene ID: HRGMv2_0279_2_8
Type: CAZyme
Location: 6640 - 7701 (-)
Type: CAZyme
Location: 6640 - 7701 (-)
Gene ID: HRGMv2_0279_2_9
Type: CAZyme
Location: 7734 - 9005 (-)
Type: CAZyme
Location: 7734 - 9005 (-)
Gene ID: HRGMv2_0279_2_10
Type: CAZyme
Location: 9317 - 10465 (+)
Type: CAZyme
Location: 9317 - 10465 (+)
Gene ID: HRGMv2_0279_2_11
Type:
Location: 10501 - 11652 (+)
Type:
Location: 10501 - 11652 (+)
Gene ID: HRGMv2_0279_2_12
Type: TC
Location: 11675 - 14878 (+)
Type: TC
Location: 11675 - 14878 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.