Cluster: HRGMv2_0279_CGC22
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0279
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0279_20 | HRGMv2_0279_20_22 | 32455 | 35655 | + | 1.B.14.6.1 |
| TC | HRGMv2_0279_20 | HRGMv2_0279_20_23 | 35695 | 37428 | + | 8.A.46.1.3 |
| pfam | HRGMv2_0279_20 | HRGMv2_0279_20_24 | 37475 | 38497 | + | DUF5017 |
| CAZyme | HRGMv2_0279_20 | HRGMv2_0279_20_25 | 38575 | 41604 | + | PL8_2 |
| CAZyme | HRGMv2_0279_20 | HRGMv2_0279_20_26 | 41642 | 42913 | + | GH88 |
Gene ID: HRGMv2_0279_20_22
Type: TC
Location: 32455 - 35655 (+)
Type: TC
Location: 32455 - 35655 (+)
Gene ID: HRGMv2_0279_20_23
Type: TC
Location: 35695 - 37428 (+)
Type: TC
Location: 35695 - 37428 (+)
Gene ID: HRGMv2_0279_20_24
Type: pfam
Location: 37475 - 38497 (+)
Type: pfam
Location: 37475 - 38497 (+)
Gene ID: HRGMv2_0279_20_25
Type: CAZyme
Location: 38575 - 41604 (+)
Type: CAZyme
Location: 38575 - 41604 (+)
Gene ID: HRGMv2_0279_20_26
Type: CAZyme
Location: 41642 - 42913 (+)
Type: CAZyme
Location: 41642 - 42913 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.