Cluster: HRGMv2_0279_CGC20
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0279
- CGC Family ID: CGCFAM_00776
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0279_19 | HRGMv2_0279_19_9 | 10919 | 13057 | - | GH13_38 |
| pfam | HRGMv2_0279_19 | HRGMv2_0279_19_10 | 13064 | 13951 | - | Acyl_transf_1 |
| CAZyme | HRGMv2_0279_19 | HRGMv2_0279_19_11 | 14167 | 15096 | + | GH73 |
| pfam | HRGMv2_0279_19 | HRGMv2_0279_19_12 | 15158 | 17566 | - | UvrD-helicase | AAA_19 | UvrD_C | UvrD_C_2 | PcrA_UvrD_tudor |
| CAZyme | HRGMv2_0279_19 | HRGMv2_0279_19_13 | 17769 | 18512 | - | GT51 |
| TC | HRGMv2_0279_19 | HRGMv2_0279_19_14 | 18594 | 19268 | - | 9.B.186.1.3 |
| NULL(UNKNOWN) | HRGMv2_0279_19 | HRGMv2_0279_19_15 | 19303 | 19413 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0279_19 | HRGMv2_0279_19_16 | 19474 | 20955 | + | tRNA-synt_2b | HGTP_anticodon | ProRS-C_1 |
| TC | HRGMv2_0279_19 | HRGMv2_0279_19_17 | 21070 | 22767 | + | 2.A.81.1.2 |
| NULL(UNKNOWN) | HRGMv2_0279_19 | HRGMv2_0279_19_18 | 22965 | 23123 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0279_19 | HRGMv2_0279_19_19 | 23134 | 25344 | - | GH92 |
| pfam | HRGMv2_0279_19 | HRGMv2_0279_19_20 | 25447 | 27198 | - | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| NULL(UNKNOWN) | HRGMv2_0279_19 | HRGMv2_0279_19_21 | 27310 | 28467 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0279_19 | HRGMv2_0279_19_22 | 28536 | 29243 | - | GH25 |
Gene ID: HRGMv2_0279_19_9
Type: CAZyme
Location: 10919 - 13057 (-)
Type: CAZyme
Location: 10919 - 13057 (-)
Gene ID: HRGMv2_0279_19_10
Type: pfam
Location: 13064 - 13951 (-)
Type: pfam
Location: 13064 - 13951 (-)
Gene ID: HRGMv2_0279_19_11
Type: CAZyme
Location: 14167 - 15096 (+)
Type: CAZyme
Location: 14167 - 15096 (+)
Gene ID: HRGMv2_0279_19_12
Type: pfam
Location: 15158 - 17566 (-)
Type: pfam
Location: 15158 - 17566 (-)
Gene ID: HRGMv2_0279_19_13
Type: CAZyme
Location: 17769 - 18512 (-)
Type: CAZyme
Location: 17769 - 18512 (-)
Gene ID: HRGMv2_0279_19_14
Type: TC
Location: 18594 - 19268 (-)
Type: TC
Location: 18594 - 19268 (-)
Gene ID: HRGMv2_0279_19_15
Type:
Location: 19303 - 19413 (+)
Type:
Location: 19303 - 19413 (+)
Gene ID: HRGMv2_0279_19_16
Type: pfam
Location: 19474 - 20955 (+)
Type: pfam
Location: 19474 - 20955 (+)
Gene ID: HRGMv2_0279_19_17
Type: TC
Location: 21070 - 22767 (+)
Type: TC
Location: 21070 - 22767 (+)
Gene ID: HRGMv2_0279_19_18
Type:
Location: 22965 - 23123 (-)
Type:
Location: 22965 - 23123 (-)
Gene ID: HRGMv2_0279_19_19
Type: CAZyme
Location: 23134 - 25344 (-)
Type: CAZyme
Location: 23134 - 25344 (-)
Gene ID: HRGMv2_0279_19_20
Type: pfam
Location: 25447 - 27198 (-)
Type: pfam
Location: 25447 - 27198 (-)
Gene ID: HRGMv2_0279_19_21
Type:
Location: 27310 - 28467 (-)
Type:
Location: 27310 - 28467 (-)
Gene ID: HRGMv2_0279_19_22
Type: CAZyme
Location: 28536 - 29243 (-)
Type: CAZyme
Location: 28536 - 29243 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.