Cluster: HRGMv2_0279_CGC17
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0279
- CGC Family ID: CGCFAM_01872
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0279_16 | HRGMv2_0279_16_11 | 13532 | 14155 | - | 9.B.18.1.3 |
| TC | HRGMv2_0279_16 | HRGMv2_0279_16_12 | 14142 | 15227 | - | 9.B.146.1.4 |
| pfam | HRGMv2_0279_16 | HRGMv2_0279_16_13 | 15585 | 16730 | - | YhcG_C | DUF1016_N |
| NULL(UNKNOWN) | HRGMv2_0279_16 | HRGMv2_0279_16_14 | 16770 | 17042 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0279_16 | HRGMv2_0279_16_15 | 16976 | 17737 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_0279_16 | HRGMv2_0279_16_16 | 17758 | 18096 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_0279_16 | HRGMv2_0279_16_17 | 18108 | 19004 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0279_16 | HRGMv2_0279_16_18 | 19094 | 19960 | - | GT4 |
| CAZyme | HRGMv2_0279_16 | HRGMv2_0279_16_19 | 20199 | 21176 | - | GT4 |
| pfam | HRGMv2_0279_16 | HRGMv2_0279_16_20 | 21243 | 22244 | - | Glyco_trans_1_2 |
| TC | HRGMv2_0279_16 | HRGMv2_0279_16_21 | 22241 | 23668 | - | 2.A.66.2.22 |
Gene ID: HRGMv2_0279_16_11
Type: TC
Location: 13532 - 14155 (-)
Type: TC
Location: 13532 - 14155 (-)
Gene ID: HRGMv2_0279_16_12
Type: TC
Location: 14142 - 15227 (-)
Type: TC
Location: 14142 - 15227 (-)
Gene ID: HRGMv2_0279_16_13
Type: pfam
Location: 15585 - 16730 (-)
Type: pfam
Location: 15585 - 16730 (-)
Gene ID: HRGMv2_0279_16_14
Type:
Location: 16770 - 17042 (+)
Type:
Location: 16770 - 17042 (+)
Gene ID: HRGMv2_0279_16_15
Type: CAZyme
Location: 16976 - 17737 (-)
Type: CAZyme
Location: 16976 - 17737 (-)
Gene ID: HRGMv2_0279_16_16
Type:
Location: 17758 - 18096 (-)
Type:
Location: 17758 - 18096 (-)
Gene ID: HRGMv2_0279_16_17
Type:
Location: 18108 - 19004 (-)
Type:
Location: 18108 - 19004 (-)
Gene ID: HRGMv2_0279_16_18
Type: CAZyme
Location: 19094 - 19960 (-)
Type: CAZyme
Location: 19094 - 19960 (-)
Gene ID: HRGMv2_0279_16_19
Type: CAZyme
Location: 20199 - 21176 (-)
Type: CAZyme
Location: 20199 - 21176 (-)
Gene ID: HRGMv2_0279_16_20
Type: pfam
Location: 21243 - 22244 (-)
Type: pfam
Location: 21243 - 22244 (-)
Gene ID: HRGMv2_0279_16_21
Type: TC
Location: 22241 - 23668 (-)
Type: TC
Location: 22241 - 23668 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0279_16_13 | vegetarian > vegan | 1.45618 | 0.02180 |