Cluster: HRGMv2_0279_CGC13
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0279
- CGC Family ID: CGCFAM_03278
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0279_9 | HRGMv2_0279_9_6 | 3798 | 4847 | + | GT2 |
| CAZyme | HRGMv2_0279_9 | HRGMv2_0279_9_7 | 4932 | 5948 | + | GT4 |
| pfam | HRGMv2_0279_9 | HRGMv2_0279_9_8 | 6077 | 6742 | - | SprT-like |
| pfam | HRGMv2_0279_9 | HRGMv2_0279_9_9 | 6756 | 7979 | - | AAA_14 | DUF4143 |
| TC | HRGMv2_0279_9 | HRGMv2_0279_9_10 | 8051 | 8647 | - | 5.A.1.2.9 |
| STP | HRGMv2_0279_9 | HRGMv2_0279_9_11 | 8662 | 9807 | - | ATPase_2 |
| TC | HRGMv2_0279_9 | HRGMv2_0279_9_12 | 9924 | 11450 | - | 3.A.7.16.1 |
| TC | HRGMv2_0279_9 | HRGMv2_0279_9_13 | 11495 | 12658 | - | 1.A.23.4.5 |
Gene ID: HRGMv2_0279_9_6
Type: CAZyme
Location: 3798 - 4847 (+)
Type: CAZyme
Location: 3798 - 4847 (+)
Gene ID: HRGMv2_0279_9_7
Type: CAZyme
Location: 4932 - 5948 (+)
Type: CAZyme
Location: 4932 - 5948 (+)
Gene ID: HRGMv2_0279_9_8
Type: pfam
Location: 6077 - 6742 (-)
Type: pfam
Location: 6077 - 6742 (-)
Gene ID: HRGMv2_0279_9_9
Type: pfam
Location: 6756 - 7979 (-)
Type: pfam
Location: 6756 - 7979 (-)
Gene ID: HRGMv2_0279_9_10
Type: TC
Location: 8051 - 8647 (-)
Type: TC
Location: 8051 - 8647 (-)
Gene ID: HRGMv2_0279_9_11
Type: STP
Location: 8662 - 9807 (-)
Type: STP
Location: 8662 - 9807 (-)
Gene ID: HRGMv2_0279_9_12
Type: TC
Location: 9924 - 11450 (-)
Type: TC
Location: 9924 - 11450 (-)
Gene ID: HRGMv2_0279_9_13
Type: TC
Location: 11495 - 12658 (-)
Type: TC
Location: 11495 - 12658 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.