Cluster: HRGMv2_0277_CGC3
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0277
- CGC Family ID: CGCFAM_09567
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0277_4 | HRGMv2_0277_4_1 | 5 | 2224 | - | 1.B.14.6.13 |
| STP | HRGMv2_0277_4 | HRGMv2_0277_4_2 | 2535 | 3614 | - | FecR |
| TF | HRGMv2_0277_4 | HRGMv2_0277_4_3 | 3713 | 4303 | - | GerE |
| TC | HRGMv2_0277_4 | HRGMv2_0277_4_4 | 4525 | 5628 | - | 3.A.1.132.3 |
| pfam | HRGMv2_0277_4 | HRGMv2_0277_4_5 | 5842 | 6612 | - | Methyltransf_4 | Methyltransf_25 | Methyltransf_31 |
| pfam | HRGMv2_0277_4 | HRGMv2_0277_4_6 | 6794 | 7810 | - | Aminotran_4 |
| CAZyme | HRGMv2_0277_4 | HRGMv2_0277_4_7 | 7892 | 9520 | - | GH20 |
| pfam | HRGMv2_0277_4 | HRGMv2_0277_4_8 | 9560 | 10699 | - | YhcG_C | DUF1016_N |
| pfam | HRGMv2_0277_4 | HRGMv2_0277_4_9 | 10861 | 11841 | - | ROK |
| TC | HRGMv2_0277_4 | HRGMv2_0277_4_10 | 12013 | 12684 | + | 2.A.76.1.6 |
| pfam | HRGMv2_0277_4 | HRGMv2_0277_4_11 | 12687 | 13247 | + | DUF4924 |
| pfam | HRGMv2_0277_4 | HRGMv2_0277_4_12 | 13583 | 14611 | - | Peptidase_C39_2 |
| TC | HRGMv2_0277_4 | HRGMv2_0277_4_13 | 14620 | 16077 | - | 8.A.46.3.1 |
| TC | HRGMv2_0277_4 | HRGMv2_0277_4_14 | 16090 | 19170 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0277_4_1
Type: TC
Location: 5 - 2224 (-)
Type: TC
Location: 5 - 2224 (-)
Gene ID: HRGMv2_0277_4_2
Type: STP
Location: 2535 - 3614 (-)
Type: STP
Location: 2535 - 3614 (-)
Gene ID: HRGMv2_0277_4_3
Type: TF
Location: 3713 - 4303 (-)
Type: TF
Location: 3713 - 4303 (-)
Gene ID: HRGMv2_0277_4_4
Type: TC
Location: 4525 - 5628 (-)
Type: TC
Location: 4525 - 5628 (-)
Gene ID: HRGMv2_0277_4_5
Type: pfam
Location: 5842 - 6612 (-)
Type: pfam
Location: 5842 - 6612 (-)
Gene ID: HRGMv2_0277_4_6
Type: pfam
Location: 6794 - 7810 (-)
Type: pfam
Location: 6794 - 7810 (-)
Gene ID: HRGMv2_0277_4_7
Type: CAZyme
Location: 7892 - 9520 (-)
Type: CAZyme
Location: 7892 - 9520 (-)
Gene ID: HRGMv2_0277_4_8
Type: pfam
Location: 9560 - 10699 (-)
Type: pfam
Location: 9560 - 10699 (-)
Gene ID: HRGMv2_0277_4_9
Type: pfam
Location: 10861 - 11841 (-)
Type: pfam
Location: 10861 - 11841 (-)
Gene ID: HRGMv2_0277_4_10
Type: TC
Location: 12013 - 12684 (+)
Type: TC
Location: 12013 - 12684 (+)
Gene ID: HRGMv2_0277_4_11
Type: pfam
Location: 12687 - 13247 (+)
Type: pfam
Location: 12687 - 13247 (+)
Gene ID: HRGMv2_0277_4_12
Type: pfam
Location: 13583 - 14611 (-)
Type: pfam
Location: 13583 - 14611 (-)
Gene ID: HRGMv2_0277_4_13
Type: TC
Location: 14620 - 16077 (-)
Type: TC
Location: 14620 - 16077 (-)
Gene ID: HRGMv2_0277_4_14
Type: TC
Location: 16090 - 19170 (-)
Type: TC
Location: 16090 - 19170 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900546575
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.