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Cluster: HRGMv2_0277_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0277_31 HRGMv2_0277_31_15 14510 15766 + 1.A.11.1.4
NULL(UNKNOWN) HRGMv2_0277_31 HRGMv2_0277_31_16 15813 15938 + NULL(UNKNOWN)
[View Structural Homologs]
peptidase HRGMv2_0277_31 HRGMv2_0277_31_17 16309 17973 + C44.UNW
CAZyme HRGMv2_0277_31 HRGMv2_0277_31_18 18005 19195 - GT4
CAZyme HRGMv2_0277_31 HRGMv2_0277_31_19 19206 20393 - GT4
NULL(UNKNOWN) HRGMv2_0277_31 HRGMv2_0277_31_20 21451 21702 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0277_31 HRGMv2_0277_31_21 22290 23237 + CBM50
pfam HRGMv2_0277_31 HRGMv2_0277_31_22 23365 23898 + Chromate_transp
TC HRGMv2_0277_31 HRGMv2_0277_31_23 24108 24680 + 2.A.51.1.6
Gene ID: HRGMv2_0277_31_15
Type: TC
Location: 14510 - 15766 (+)
Gene ID: HRGMv2_0277_31_16
Type:
Location: 15813 - 15938 (+)
Gene ID: HRGMv2_0277_31_17
Type: peptidase
Location: 16309 - 17973 (+)
Gene ID: HRGMv2_0277_31_18
Type: CAZyme
Location: 18005 - 19195 (-)
Gene ID: HRGMv2_0277_31_19
Type: CAZyme
Location: 19206 - 20393 (-)
Gene ID: HRGMv2_0277_31_20
Type:
Location: 21451 - 21702 (-)
Gene ID: HRGMv2_0277_31_21
Type: CAZyme
Location: 22290 - 23237 (+)
Gene ID: HRGMv2_0277_31_22
Type: pfam
Location: 23365 - 23898 (+)
Gene ID: HRGMv2_0277_31_23
Type: TC
Location: 24108 - 24680 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0277_31_20 vegetarian > omnivore 1.57299 0.02377
HRGMv2_0277_31_20 vegetarian > vegan 2.03559 0.03383

🧭 Explore Read Mapping of CGC

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