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Cluster: HRGMv2_0277_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0277_12 HRGMv2_0277_12_1 269 2731 - GH2
CAZyme HRGMv2_0277_12 HRGMv2_0277_12_2 2964 4145 - GH53
pfam HRGMv2_0277_12 HRGMv2_0277_12_3 4258 5661 - SusE | DUF5111 | DUF5114
TC HRGMv2_0277_12 HRGMv2_0277_12_4 5735 7318 - 8.A.46.1.1
TC HRGMv2_0277_12 HRGMv2_0277_12_5 7457 10429 - 1.B.14.6.1
TF HRGMv2_0277_12 HRGMv2_0277_12_6 11534 14935 + HTH_AraC
pfam HRGMv2_0277_12 HRGMv2_0277_12_7 14939 16645 + PseudoU_synth_2
CAZyme HRGMv2_0277_12 HRGMv2_0277_12_8 17228 18901 + GH110
Gene ID: HRGMv2_0277_12_1
Type: CAZyme
Location: 269 - 2731 (-)
Gene ID: HRGMv2_0277_12_2
Type: CAZyme
Location: 2964 - 4145 (-)
Gene ID: HRGMv2_0277_12_3
Type: pfam
Location: 4258 - 5661 (-)
Gene ID: HRGMv2_0277_12_4
Type: TC
Location: 5735 - 7318 (-)
Gene ID: HRGMv2_0277_12_5
Type: TC
Location: 7457 - 10429 (-)
Gene ID: HRGMv2_0277_12_6
Type: TF
Location: 11534 - 14935 (+)
Gene ID: HRGMv2_0277_12_7
Type: pfam
Location: 14939 - 16645 (+)
Gene ID: HRGMv2_0277_12_8
Type: CAZyme
Location: 17228 - 18901 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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