Cluster: HRGMv2_0275_CGC29
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate: pectin/galactan
- Genome ID: HRGMv2_0275
- CGC Family ID: CGCFAM_00031
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0275_29 | HRGMv2_0275_29_18 | 18216 | 21098 | + | PL8_2 |
| pfam | HRGMv2_0275_29 | HRGMv2_0275_29_19 | 21163 | 22845 | - | PseudoU_synth_2 |
| TF | HRGMv2_0275_29 | HRGMv2_0275_29_20 | 22885 | 26286 | - | HTH_AraC |
| TC | HRGMv2_0275_29 | HRGMv2_0275_29_21 | 26624 | 29602 | + | 1.B.14.6.1 |
| TC | HRGMv2_0275_29 | HRGMv2_0275_29_22 | 29666 | 31327 | + | 8.A.46.1.1 |
| pfam | HRGMv2_0275_29 | HRGMv2_0275_29_23 | 31413 | 32798 | + | SusE | DUF5111 | DUF5114 |
| CAZyme | HRGMv2_0275_29 | HRGMv2_0275_29_24 | 32819 | 33868 | + | GH53 |
| CAZyme | HRGMv2_0275_29 | HRGMv2_0275_29_25 | 33944 | 36406 | + | GH2 |
Gene ID: HRGMv2_0275_29_18
Type: CAZyme
Location: 18216 - 21098 (+)
Type: CAZyme
Location: 18216 - 21098 (+)
Gene ID: HRGMv2_0275_29_19
Type: pfam
Location: 21163 - 22845 (-)
Type: pfam
Location: 21163 - 22845 (-)
Gene ID: HRGMv2_0275_29_20
Type: TF
Location: 22885 - 26286 (-)
Type: TF
Location: 22885 - 26286 (-)
Gene ID: HRGMv2_0275_29_21
Type: TC
Location: 26624 - 29602 (+)
Type: TC
Location: 26624 - 29602 (+)
Gene ID: HRGMv2_0275_29_22
Type: TC
Location: 29666 - 31327 (+)
Type: TC
Location: 29666 - 31327 (+)
Gene ID: HRGMv2_0275_29_23
Type: pfam
Location: 31413 - 32798 (+)
Type: pfam
Location: 31413 - 32798 (+)
Gene ID: HRGMv2_0275_29_24
Type: CAZyme
Location: 32819 - 33868 (+)
Type: CAZyme
Location: 32819 - 33868 (+)
Gene ID: HRGMv2_0275_29_25
Type: CAZyme
Location: 33944 - 36406 (+)
Type: CAZyme
Location: 33944 - 36406 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900552515
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0275_29_21 | vegan > omnivore | 1.91651 | 0.01868 |
| HRGMv2_0275_29_21 | vegetarian > omnivore | 2.11029 | 0.00776 |
| HRGMv2_0275_29_22 | vegan > omnivore | 1.96058 | 0.01868 |
| HRGMv2_0275_29_22 | vegetarian > omnivore | 1.83713 | 0.00776 |