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Cluster: HRGMv2_0275_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0275_24 HRGMv2_0275_24_19 27672 28892 - 3.A.1.125.1
pfam HRGMv2_0275_24 HRGMv2_0275_24_20 28889 29224 - RBFA
pfam HRGMv2_0275_24 HRGMv2_0275_24_21 29654 31393 - SusD_RagB | SusD-like_3
TC HRGMv2_0275_24 HRGMv2_0275_24_22 31464 34580 - 1.B.14.6.1
TF HRGMv2_0275_24 HRGMv2_0275_24_23 34775 37000 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_0275_24 HRGMv2_0275_24_24 37225 38949 + GH32
TC HRGMv2_0275_24 HRGMv2_0275_24_25 39095 40306 + 2.A.1.7.17
Gene ID: HRGMv2_0275_24_19
Type: TC
Location: 27672 - 28892 (-)
Gene ID: HRGMv2_0275_24_20
Type: pfam
Location: 28889 - 29224 (-)
Gene ID: HRGMv2_0275_24_21
Type: pfam
Location: 29654 - 31393 (-)
Gene ID: HRGMv2_0275_24_22
Type: TC
Location: 31464 - 34580 (-)
Gene ID: HRGMv2_0275_24_23
Type: TF
Location: 34775 - 37000 (-)
Gene ID: HRGMv2_0275_24_24
Type: CAZyme
Location: 37225 - 38949 (+)
Gene ID: HRGMv2_0275_24_25
Type: TC
Location: 39095 - 40306 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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