Cluster: HRGMv2_0273_CGC30
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: HRGMv2_0273
- CGC Family ID: CGCFAM_00001
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0273_25 | HRGMv2_0273_25_2 | 453 | 881 | - | 1.A.22.1.1 |
| pfam | HRGMv2_0273_25 | HRGMv2_0273_25_3 | 1156 | 2232 | + | Gp_dh_N | Gp_dh_C |
| CAZyme | HRGMv2_0273_25 | HRGMv2_0273_25_4 | 2550 | 4298 | - | GH13_44 |
| pfam | HRGMv2_0273_25 | HRGMv2_0273_25_5 | 4366 | 6093 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0273_25 | HRGMv2_0273_25_6 | 6114 | 9101 | - | 1.B.14.6.1 |
| TC | HRGMv2_0273_25 | HRGMv2_0273_25_7 | 9366 | 10628 | - | 1.A.11.2.7 |
Gene ID: HRGMv2_0273_25_2
Type: TC
Location: 453 - 881 (-)
Type: TC
Location: 453 - 881 (-)
Gene ID: HRGMv2_0273_25_3
Type: pfam
Location: 1156 - 2232 (+)
Type: pfam
Location: 1156 - 2232 (+)
Gene ID: HRGMv2_0273_25_4
Type: CAZyme
Location: 2550 - 4298 (-)
Type: CAZyme
Location: 2550 - 4298 (-)
Gene ID: HRGMv2_0273_25_5
Type: pfam
Location: 4366 - 6093 (-)
Type: pfam
Location: 4366 - 6093 (-)
Gene ID: HRGMv2_0273_25_6
Type: TC
Location: 6114 - 9101 (-)
Type: TC
Location: 6114 - 9101 (-)
Gene ID: HRGMv2_0273_25_7
Type: TC
Location: 9366 - 10628 (-)
Type: TC
Location: 9366 - 10628 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp002299635
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.