Cluster: HRGMv2_0273_CGC24
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0273
- CGC Family ID: CGCFAM_00519
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0273_18 | HRGMv2_0273_18_28 | 25290 | 27479 | - | GH36 |
| NULL(UNKNOWN) | HRGMv2_0273_18 | HRGMv2_0273_18_29 | 27734 | 27829 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0273_18 | HRGMv2_0273_18_30 | 27915 | 29495 | - | 8.A.46.1.6 |
| TC | HRGMv2_0273_18 | HRGMv2_0273_18_31 | 29503 | 32625 | - | 1.B.14.6.1 |
| pfam | HRGMv2_0273_18 | HRGMv2_0273_18_32 | 32885 | 34489 | + | DUF6377 |
| pfam | HRGMv2_0273_18 | HRGMv2_0273_18_33 | 35311 | 36642 | + | Mur_ligase | Mur_ligase_C | Mur_ligase_M |
| TC | HRGMv2_0273_18 | HRGMv2_0273_18_34 | 36700 | 37998 | + | 2.A.40.7.6 |
| pfam | HRGMv2_0273_18 | HRGMv2_0273_18_35 | 38006 | 39028 | - | Exo_endo_phos |
| CAZyme | HRGMv2_0273_18 | HRGMv2_0273_18_36 | 39047 | 40618 | - | GH20 |
| pfam | HRGMv2_0273_18 | HRGMv2_0273_18_37 | 40638 | 42473 | - | FAD_binding_2 | GIDA | Pyr_redox_2 | FAD_oxidored | NAD_binding_8 |
| TC | HRGMv2_0273_18 | HRGMv2_0273_18_38 | 42551 | 43954 | - | 8.A.46.1.3 |
| TC | HRGMv2_0273_18 | HRGMv2_0273_18_39 | 44309 | 47614 | - | 1.B.14.6.1 |
| STP | HRGMv2_0273_18 | HRGMv2_0273_18_40 | 47679 | 48680 | - | FecR |
| TF | HRGMv2_0273_18 | HRGMv2_0273_18_41 | 48742 | 49350 | - | GerE |
| CAZyme | HRGMv2_0273_18 | HRGMv2_0273_18_42 | 49464 | 50363 | - | GT14 |
Gene ID: HRGMv2_0273_18_28
Type: CAZyme
Location: 25290 - 27479 (-)
Type: CAZyme
Location: 25290 - 27479 (-)
Gene ID: HRGMv2_0273_18_29
Type:
Location: 27734 - 27829 (+)
Type:
Location: 27734 - 27829 (+)
Gene ID: HRGMv2_0273_18_30
Type: TC
Location: 27915 - 29495 (-)
Type: TC
Location: 27915 - 29495 (-)
Gene ID: HRGMv2_0273_18_31
Type: TC
Location: 29503 - 32625 (-)
Type: TC
Location: 29503 - 32625 (-)
Gene ID: HRGMv2_0273_18_32
Type: pfam
Location: 32885 - 34489 (+)
Type: pfam
Location: 32885 - 34489 (+)
Gene ID: HRGMv2_0273_18_33
Type: pfam
Location: 35311 - 36642 (+)
Type: pfam
Location: 35311 - 36642 (+)
Gene ID: HRGMv2_0273_18_34
Type: TC
Location: 36700 - 37998 (+)
Type: TC
Location: 36700 - 37998 (+)
Gene ID: HRGMv2_0273_18_35
Type: pfam
Location: 38006 - 39028 (-)
Type: pfam
Location: 38006 - 39028 (-)
Gene ID: HRGMv2_0273_18_36
Type: CAZyme
Location: 39047 - 40618 (-)
Type: CAZyme
Location: 39047 - 40618 (-)
Gene ID: HRGMv2_0273_18_37
Type: pfam
Location: 40638 - 42473 (-)
Type: pfam
Location: 40638 - 42473 (-)
Gene ID: HRGMv2_0273_18_38
Type: TC
Location: 42551 - 43954 (-)
Type: TC
Location: 42551 - 43954 (-)
Gene ID: HRGMv2_0273_18_39
Type: TC
Location: 44309 - 47614 (-)
Type: TC
Location: 44309 - 47614 (-)
Gene ID: HRGMv2_0273_18_40
Type: STP
Location: 47679 - 48680 (-)
Type: STP
Location: 47679 - 48680 (-)
Gene ID: HRGMv2_0273_18_41
Type: TF
Location: 48742 - 49350 (-)
Type: TF
Location: 48742 - 49350 (-)
Gene ID: HRGMv2_0273_18_42
Type: CAZyme
Location: 49464 - 50363 (-)
Type: CAZyme
Location: 49464 - 50363 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp002299635
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.