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Cluster: HRGMv2_0273_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0273_10 HRGMv2_0273_10_2 317 2635 + GH3
CAZyme HRGMv2_0273_10 HRGMv2_0273_10_3 3305 4582 - GH33
pfam HRGMv2_0273_10 HRGMv2_0273_10_4 4762 5751 + PDDEXK_2
STP HRGMv2_0273_10 HRGMv2_0273_10_5 5854 6729 - PfkB
TC HRGMv2_0273_10 HRGMv2_0273_10_6 6751 7980 - 2.A.1.7.17
CAZyme HRGMv2_0273_10 HRGMv2_0273_10_7 8149 9867 - GH32
pfam HRGMv2_0273_10 HRGMv2_0273_10_8 10033 11793 - SusD_RagB | SusD-like_3
TC HRGMv2_0273_10 HRGMv2_0273_10_9 11823 14954 - 1.B.14.6.1
Gene ID: HRGMv2_0273_10_2
Type: CAZyme
Location: 317 - 2635 (+)
Gene ID: HRGMv2_0273_10_3
Type: CAZyme
Location: 3305 - 4582 (-)
Gene ID: HRGMv2_0273_10_4
Type: pfam
Location: 4762 - 5751 (+)
Gene ID: HRGMv2_0273_10_5
Type: STP
Location: 5854 - 6729 (-)
Gene ID: HRGMv2_0273_10_6
Type: TC
Location: 6751 - 7980 (-)
Gene ID: HRGMv2_0273_10_7
Type: CAZyme
Location: 8149 - 9867 (-)
Gene ID: HRGMv2_0273_10_8
Type: pfam
Location: 10033 - 11793 (-)
Gene ID: HRGMv2_0273_10_9
Type: TC
Location: 11823 - 14954 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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