Cluster: HRGMv2_0271_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0271
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0271_39 | HRGMv2_0271_39_2 | 580 | 3510 | + | GH27 |
| pfam | HRGMv2_0271_39 | HRGMv2_0271_39_3 | 3744 | 5018 | + | Lnb_N |
| pfam | HRGMv2_0271_39 | HRGMv2_0271_39_4 | 5105 | 6718 | + | Phosphodiest |
| TC | HRGMv2_0271_39 | HRGMv2_0271_39_5 | 6879 | 10244 | + | 3.A.5.1.1 |
| pfam | HRGMv2_0271_39 | HRGMv2_0271_39_6 | 10573 | 11166 | + | AICARFT_IMPCHas | MGS |
| TC | HRGMv2_0271_39 | HRGMv2_0271_39_7 | 11187 | 12218 | + | 1.A.33.1.5 |
Gene ID: HRGMv2_0271_39_2
Type: CAZyme
Location: 580 - 3510 (+)
Type: CAZyme
Location: 580 - 3510 (+)
Gene ID: HRGMv2_0271_39_3
Type: pfam
Location: 3744 - 5018 (+)
Type: pfam
Location: 3744 - 5018 (+)
Gene ID: HRGMv2_0271_39_4
Type: pfam
Location: 5105 - 6718 (+)
Type: pfam
Location: 5105 - 6718 (+)
Gene ID: HRGMv2_0271_39_5
Type: TC
Location: 6879 - 10244 (+)
Type: TC
Location: 6879 - 10244 (+)
Gene ID: HRGMv2_0271_39_6
Type: pfam
Location: 10573 - 11166 (+)
Type: pfam
Location: 10573 - 11166 (+)
Gene ID: HRGMv2_0271_39_7
Type: TC
Location: 11187 - 12218 (+)
Type: TC
Location: 11187 - 12218 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Alloprevotella
Species
Alloprevotella sp900543155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.