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Cluster: HRGMv2_0269_CGC33

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0269_20 HRGMv2_0269_20_26 27185 28270 - 9.A.40.2.4
CAZyme HRGMv2_0269_20 HRGMv2_0269_20_27 28340 31471 - GH50
CAZyme HRGMv2_0269_20 HRGMv2_0269_20_28 31468 33555 - GH50
NULL(UNKNOWN) HRGMv2_0269_20 HRGMv2_0269_20_29 33561 34592 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0269_20 HRGMv2_0269_20_30 34644 36446 - SusD_RagB | SusD-like_3
TC HRGMv2_0269_20 HRGMv2_0269_20_31 36463 39273 - 1.B.14.6.1
pfam HRGMv2_0269_20 HRGMv2_0269_20_32 39286 41190 - SusD_RagB | SusD-like_3
TC HRGMv2_0269_20 HRGMv2_0269_20_33 41190 44381 - 1.B.14.6.1
CAZyme HRGMv2_0269_20 HRGMv2_0269_20_34 44432 45862 - GH39
Gene ID: HRGMv2_0269_20_26
Type: TC
Location: 27185 - 28270 (-)
Gene ID: HRGMv2_0269_20_27
Type: CAZyme
Location: 28340 - 31471 (-)
Gene ID: HRGMv2_0269_20_28
Type: CAZyme
Location: 31468 - 33555 (-)
Gene ID: HRGMv2_0269_20_29
Type:
Location: 33561 - 34592 (-)
Gene ID: HRGMv2_0269_20_30
Type: pfam
Location: 34644 - 36446 (-)
Gene ID: HRGMv2_0269_20_31
Type: TC
Location: 36463 - 39273 (-)
Gene ID: HRGMv2_0269_20_32
Type: pfam
Location: 39286 - 41190 (-)
Gene ID: HRGMv2_0269_20_33
Type: TC
Location: 41190 - 44381 (-)
Gene ID: HRGMv2_0269_20_34
Type: CAZyme
Location: 44432 - 45862 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0269_20_26 vegetarian > vegan 17.49000 0.00000

🧭 Explore Read Mapping of CGC

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