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Cluster: HRGMv2_0258_CGC98

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0258_28 HRGMv2_0258_28_11 13156 14964 + 4.C.1.1.14
pfam HRGMv2_0258_28 HRGMv2_0258_28_12 15174 16142 + RF-1 | PCRF
pfam HRGMv2_0258_28 HRGMv2_0258_28_13 16368 18161 - FAD_binding_2 | GIDA | FAD_oxidored | NAD_binding_8
TC HRGMv2_0258_28 HRGMv2_0258_28_14 18254 19921 - 8.A.46.1.3
TC HRGMv2_0258_28 HRGMv2_0258_28_15 19935 23243 - 1.B.14.6.1
STP HRGMv2_0258_28 HRGMv2_0258_28_16 23376 24305 - FecR
STP HRGMv2_0258_28 HRGMv2_0258_28_17 24385 25005 - Sigma70_r2 | Sigma70_r4_2
CAZyme HRGMv2_0258_28 HRGMv2_0258_28_18 25904 28714 - GH2
pfam HRGMv2_0258_28 HRGMv2_0258_28_19 28803 30788 - SusD_RagB | SusD-like_3
TC HRGMv2_0258_28 HRGMv2_0258_28_20 30801 34310 - 1.B.14.6.1
Gene ID: HRGMv2_0258_28_11
Type: TC
Location: 13156 - 14964 (+)
Gene ID: HRGMv2_0258_28_12
Type: pfam
Location: 15174 - 16142 (+)
Gene ID: HRGMv2_0258_28_13
Type: pfam
Location: 16368 - 18161 (-)
Gene ID: HRGMv2_0258_28_14
Type: TC
Location: 18254 - 19921 (-)
Gene ID: HRGMv2_0258_28_15
Type: TC
Location: 19935 - 23243 (-)
Gene ID: HRGMv2_0258_28_16
Type: STP
Location: 23376 - 24305 (-)
Gene ID: HRGMv2_0258_28_17
Type: STP
Location: 24385 - 25005 (-)
Gene ID: HRGMv2_0258_28_18
Type: CAZyme
Location: 25904 - 28714 (-)
Gene ID: HRGMv2_0258_28_19
Type: pfam
Location: 28803 - 30788 (-)
Gene ID: HRGMv2_0258_28_20
Type: TC
Location: 30801 - 34310 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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