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Cluster: HRGMv2_0258_CGC96

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0258_27 HRGMv2_0258_27_44 39854 41530 + 2.A.81.1.2
TC HRGMv2_0258_27 HRGMv2_0258_27_45 41592 43136 - 2.A.49.6.1
pfam HRGMv2_0258_27 HRGMv2_0258_27_46 43242 44198 + Phage_integrase | Phage_int_SAM_5
TC HRGMv2_0258_27 HRGMv2_0258_27_47 44830 45969 + 9.B.146.1.4
CAZyme HRGMv2_0258_27 HRGMv2_0258_27_48 45954 47021 + GT2
CAZyme HRGMv2_0258_27 HRGMv2_0258_27_49 47025 48065 + GT4
pfam HRGMv2_0258_27 HRGMv2_0258_27_50 48062 49243 + Wzy_C
TC HRGMv2_0258_27 HRGMv2_0258_27_51 49253 50974 + 3.A.1.106.15
NULL(UNKNOWN) HRGMv2_0258_27 HRGMv2_0258_27_52 51064 51330 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0258_27 HRGMv2_0258_27_53 51389 51835 - GH73
Gene ID: HRGMv2_0258_27_44
Type: TC
Location: 39854 - 41530 (+)
Gene ID: HRGMv2_0258_27_45
Type: TC
Location: 41592 - 43136 (-)
Gene ID: HRGMv2_0258_27_46
Type: pfam
Location: 43242 - 44198 (+)
Gene ID: HRGMv2_0258_27_47
Type: TC
Location: 44830 - 45969 (+)
Gene ID: HRGMv2_0258_27_48
Type: CAZyme
Location: 45954 - 47021 (+)
Gene ID: HRGMv2_0258_27_49
Type: CAZyme
Location: 47025 - 48065 (+)
Gene ID: HRGMv2_0258_27_50
Type: pfam
Location: 48062 - 49243 (+)
Gene ID: HRGMv2_0258_27_51
Type: TC
Location: 49253 - 50974 (+)
Gene ID: HRGMv2_0258_27_52
Type:
Location: 51064 - 51330 (-)
Gene ID: HRGMv2_0258_27_53
Type: CAZyme
Location: 51389 - 51835 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0258_27_45 vegetarian > vegan 1.11703 0.01710

🧭 Explore Read Mapping of CGC

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