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Cluster: HRGMv2_0258_CGC83

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0258_21 HRGMv2_0258_21_42 64601 67873 + 1.B.14.6.1
pfam HRGMv2_0258_21 HRGMv2_0258_21_43 67882 69939 + SusD_RagB | SusD-like_3
NULL(UNKNOWN) HRGMv2_0258_21 HRGMv2_0258_21_44 70320 70769 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0258_21 HRGMv2_0258_21_45 71617 73086 - GH125
CAZyme HRGMv2_0258_21 HRGMv2_0258_21_46 73104 74288 - GH76
pfam HRGMv2_0258_21 HRGMv2_0258_21_47 74609 76207 - DUF4832 | DUF4874
pfam HRGMv2_0258_21 HRGMv2_0258_21_48 76291 78210 - SusD_RagB | SusD-like_3
TC HRGMv2_0258_21 HRGMv2_0258_21_49 78222 81695 - 1.B.14.6.1
Gene ID: HRGMv2_0258_21_42
Type: TC
Location: 64601 - 67873 (+)
Gene ID: HRGMv2_0258_21_43
Type: pfam
Location: 67882 - 69939 (+)
Gene ID: HRGMv2_0258_21_44
Type:
Location: 70320 - 70769 (+)
Gene ID: HRGMv2_0258_21_45
Type: CAZyme
Location: 71617 - 73086 (-)
Gene ID: HRGMv2_0258_21_46
Type: CAZyme
Location: 73104 - 74288 (-)
Gene ID: HRGMv2_0258_21_47
Type: pfam
Location: 74609 - 76207 (-)
Gene ID: HRGMv2_0258_21_48
Type: pfam
Location: 76291 - 78210 (-)
Gene ID: HRGMv2_0258_21_49
Type: TC
Location: 78222 - 81695 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0258_21_47 vegetarian > vegan 1.90227 0.01710

🧭 Explore Read Mapping of CGC

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