Cluster: HRGMv2_0258_CGC82
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0258
- CGC Family ID: CGCFAM_00150
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0258_21 | HRGMv2_0258_21_16 | 21148 | 24630 | + | 1.B.14.6.1 |
| TC | HRGMv2_0258_21 | HRGMv2_0258_21_17 | 24643 | 26145 | + | 8.A.46.1.4 |
| CAZyme | HRGMv2_0258_21 | HRGMv2_0258_21_18 | 26229 | 27407 | + | GH33 |
| CAZyme | HRGMv2_0258_21 | HRGMv2_0258_21_19 | 27498 | 29783 | + | GH20 |
| NULL(UNKNOWN) | HRGMv2_0258_21 | HRGMv2_0258_21_20 | 29799 | 30821 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0258_21 | HRGMv2_0258_21_21 | 30880 | 32085 | + | GH109 |
| STP | HRGMv2_0258_21 | HRGMv2_0258_21_22 | 32359 | 32925 | + | Sigma70_r2 | Sigma70_r4_2 |
| STP | HRGMv2_0258_21 | HRGMv2_0258_21_23 | 32950 | 34203 | + | FecR |
| TC | HRGMv2_0258_21 | HRGMv2_0258_21_24 | 34298 | 37831 | + | 1.B.14.6.1 |
| TC | HRGMv2_0258_21 | HRGMv2_0258_21_25 | 37858 | 39324 | + | 8.A.46.1.4 |
| CAZyme | HRGMv2_0258_21 | HRGMv2_0258_21_26 | 39349 | 41463 | + | GH33 |
Gene ID: HRGMv2_0258_21_16
Type: TC
Location: 21148 - 24630 (+)
Type: TC
Location: 21148 - 24630 (+)
Gene ID: HRGMv2_0258_21_17
Type: TC
Location: 24643 - 26145 (+)
Type: TC
Location: 24643 - 26145 (+)
Gene ID: HRGMv2_0258_21_18
Type: CAZyme
Location: 26229 - 27407 (+)
Type: CAZyme
Location: 26229 - 27407 (+)
Gene ID: HRGMv2_0258_21_19
Type: CAZyme
Location: 27498 - 29783 (+)
Type: CAZyme
Location: 27498 - 29783 (+)
Gene ID: HRGMv2_0258_21_20
Type:
Location: 29799 - 30821 (+)
Type:
Location: 29799 - 30821 (+)
Gene ID: HRGMv2_0258_21_21
Type: CAZyme
Location: 30880 - 32085 (+)
Type: CAZyme
Location: 30880 - 32085 (+)
Gene ID: HRGMv2_0258_21_22
Type: STP
Location: 32359 - 32925 (+)
Type: STP
Location: 32359 - 32925 (+)
Gene ID: HRGMv2_0258_21_23
Type: STP
Location: 32950 - 34203 (+)
Type: STP
Location: 32950 - 34203 (+)
Gene ID: HRGMv2_0258_21_24
Type: TC
Location: 34298 - 37831 (+)
Type: TC
Location: 34298 - 37831 (+)
Gene ID: HRGMv2_0258_21_25
Type: TC
Location: 37858 - 39324 (+)
Type: TC
Location: 37858 - 39324 (+)
Gene ID: HRGMv2_0258_21_26
Type: CAZyme
Location: 39349 - 41463 (+)
Type: CAZyme
Location: 39349 - 41463 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides goldsteinii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0258_21_19 | vegetarian > omnivore | 1.89065 | 0.01449 |
| HRGMv2_0258_21_19 | vegetarian > vegan | 1.42759 | 0.01710 |
| HRGMv2_0258_21_20 | vegetarian > omnivore | 1.06285 | 0.01449 |
| HRGMv2_0258_21_20 | vegetarian > vegan | 1.41598 | 0.01710 |
| HRGMv2_0258_21_21 | vegetarian > vegan | 1.14001 | 0.01710 |
| HRGMv2_0258_21_21 | vegetarian > omnivore | 1.70215 | 0.00750 |