Cluster: HRGMv2_0258_CGC78
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0258
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0258_20 | HRGMv2_0258_20_3 | 3315 | 4286 | - | GH23 |
| pfam | HRGMv2_0258_20 | HRGMv2_0258_20_4 | 4267 | 5685 | - | CHU_C |
| CAZyme | HRGMv2_0258_20 | HRGMv2_0258_20_5 | 5767 | 7566 | + | CBM50 | CBM50 |
| pfam | HRGMv2_0258_20 | HRGMv2_0258_20_6 | 7593 | 8231 | + | OMP_b-brl_2 |
| TF | HRGMv2_0258_20 | HRGMv2_0258_20_7 | 8237 | 12163 | - | HTH_AraC |
| CAZyme | HRGMv2_0258_20 | HRGMv2_0258_20_8 | 12585 | 14900 | + | GH20 |
| CAZyme | HRGMv2_0258_20 | HRGMv2_0258_20_9 | 14924 | 18031 | + | GH2 |
| pfam | HRGMv2_0258_20 | HRGMv2_0258_20_10 | 18217 | 20568 | + | FtsX | FtsX | MacB_PCD | MacB_PCD |
| pfam | HRGMv2_0258_20 | HRGMv2_0258_20_11 | 20599 | 23046 | + | FtsX | FtsX | MacB_PCD | MacB_PCD |
| CAZyme | HRGMv2_0258_20 | HRGMv2_0258_20_12 | 23070 | 24680 | - | GT83 |
| pfam | HRGMv2_0258_20 | HRGMv2_0258_20_13 | 25038 | 25493 | - | HU-HIG |
| pfam | HRGMv2_0258_20 | HRGMv2_0258_20_14 | 25627 | 27567 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0258_20 | HRGMv2_0258_20_15 | 27588 | 30866 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0258_20_3
Type: CAZyme
Location: 3315 - 4286 (-)
Type: CAZyme
Location: 3315 - 4286 (-)
Gene ID: HRGMv2_0258_20_4
Type: pfam
Location: 4267 - 5685 (-)
Type: pfam
Location: 4267 - 5685 (-)
Gene ID: HRGMv2_0258_20_5
Type: CAZyme
Location: 5767 - 7566 (+)
Type: CAZyme
Location: 5767 - 7566 (+)
Gene ID: HRGMv2_0258_20_6
Type: pfam
Location: 7593 - 8231 (+)
Type: pfam
Location: 7593 - 8231 (+)
Gene ID: HRGMv2_0258_20_7
Type: TF
Location: 8237 - 12163 (-)
Type: TF
Location: 8237 - 12163 (-)
Gene ID: HRGMv2_0258_20_8
Type: CAZyme
Location: 12585 - 14900 (+)
Type: CAZyme
Location: 12585 - 14900 (+)
Gene ID: HRGMv2_0258_20_9
Type: CAZyme
Location: 14924 - 18031 (+)
Type: CAZyme
Location: 14924 - 18031 (+)
Gene ID: HRGMv2_0258_20_10
Type: pfam
Location: 18217 - 20568 (+)
Type: pfam
Location: 18217 - 20568 (+)
Gene ID: HRGMv2_0258_20_11
Type: pfam
Location: 20599 - 23046 (+)
Type: pfam
Location: 20599 - 23046 (+)
Gene ID: HRGMv2_0258_20_12
Type: CAZyme
Location: 23070 - 24680 (-)
Type: CAZyme
Location: 23070 - 24680 (-)
Gene ID: HRGMv2_0258_20_13
Type: pfam
Location: 25038 - 25493 (-)
Type: pfam
Location: 25038 - 25493 (-)
Gene ID: HRGMv2_0258_20_14
Type: pfam
Location: 25627 - 27567 (-)
Type: pfam
Location: 25627 - 27567 (-)
Gene ID: HRGMv2_0258_20_15
Type: TC
Location: 27588 - 30866 (-)
Type: TC
Location: 27588 - 30866 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides goldsteinii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.