Cluster: HRGMv2_0258_CGC75
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 13
- Substrate:
- Genome ID: HRGMv2_0258
- CGC Family ID: CGCFAM_02537
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0258_19 | HRGMv2_0258_19_20 | 28910 | 31198 | - | GH95 |
| CAZyme | HRGMv2_0258_19 | HRGMv2_0258_19_21 | 31185 | 33401 | - | GH3 |
| CAZyme | HRGMv2_0258_19 | HRGMv2_0258_19_22 | 33415 | 35859 | - | GH2 |
| CAZyme | HRGMv2_0258_19 | HRGMv2_0258_19_23 | 35888 | 37624 | - | CBM32 | GH43_28 |
| CAZyme | HRGMv2_0258_19 | HRGMv2_0258_19_24 | 37745 | 40009 | - | GH92 |
| NULL(UNKNOWN) | HRGMv2_0258_19 | HRGMv2_0258_19_25 | 40136 | 42430 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0258_19 | HRGMv2_0258_19_26 | 42432 | 44675 | - | GH182 |
| CAZyme | HRGMv2_0258_19 | HRGMv2_0258_19_27 | 44672 | 46927 | - | GH95 |
| pfam | HRGMv2_0258_19 | HRGMv2_0258_19_28 | 47116 | 50091 | - | Laminin_G_3 |
| CAZyme | HRGMv2_0258_19 | HRGMv2_0258_19_29 | 50244 | 52979 | - | GH38 |
| pfam | HRGMv2_0258_19 | HRGMv2_0258_19_30 | 53201 | 54991 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0258_19 | HRGMv2_0258_19_31 | 55007 | 58186 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_0258_19 | HRGMv2_0258_19_32 | 58870 | 60303 | - | GH43_2 |
| CAZyme | HRGMv2_0258_19 | HRGMv2_0258_19_33 | 60310 | 62187 | - | GH120 |
| CAZyme | HRGMv2_0258_19 | HRGMv2_0258_19_34 | 62335 | 64701 | - | GH31_4 |
| CAZyme | HRGMv2_0258_19 | HRGMv2_0258_19_35 | 64725 | 67013 | - | GH120 |
| CAZyme | HRGMv2_0258_19 | HRGMv2_0258_19_36 | 67010 | 69259 | - | GH182 |
Gene ID: HRGMv2_0258_19_20
Type: CAZyme
Location: 28910 - 31198 (-)
Type: CAZyme
Location: 28910 - 31198 (-)
Gene ID: HRGMv2_0258_19_21
Type: CAZyme
Location: 31185 - 33401 (-)
Type: CAZyme
Location: 31185 - 33401 (-)
Gene ID: HRGMv2_0258_19_22
Type: CAZyme
Location: 33415 - 35859 (-)
Type: CAZyme
Location: 33415 - 35859 (-)
Gene ID: HRGMv2_0258_19_23
Type: CAZyme
Location: 35888 - 37624 (-)
Type: CAZyme
Location: 35888 - 37624 (-)
Gene ID: HRGMv2_0258_19_24
Type: CAZyme
Location: 37745 - 40009 (-)
Type: CAZyme
Location: 37745 - 40009 (-)
Gene ID: HRGMv2_0258_19_25
Type:
Location: 40136 - 42430 (-)
Type:
Location: 40136 - 42430 (-)
Gene ID: HRGMv2_0258_19_26
Type: CAZyme
Location: 42432 - 44675 (-)
Type: CAZyme
Location: 42432 - 44675 (-)
Gene ID: HRGMv2_0258_19_27
Type: CAZyme
Location: 44672 - 46927 (-)
Type: CAZyme
Location: 44672 - 46927 (-)
Gene ID: HRGMv2_0258_19_28
Type: pfam
Location: 47116 - 50091 (-)
Type: pfam
Location: 47116 - 50091 (-)
Gene ID: HRGMv2_0258_19_29
Type: CAZyme
Location: 50244 - 52979 (-)
Type: CAZyme
Location: 50244 - 52979 (-)
Gene ID: HRGMv2_0258_19_30
Type: pfam
Location: 53201 - 54991 (-)
Type: pfam
Location: 53201 - 54991 (-)
Gene ID: HRGMv2_0258_19_31
Type: TC
Location: 55007 - 58186 (-)
Type: TC
Location: 55007 - 58186 (-)
Gene ID: HRGMv2_0258_19_32
Type: CAZyme
Location: 58870 - 60303 (-)
Type: CAZyme
Location: 58870 - 60303 (-)
Gene ID: HRGMv2_0258_19_33
Type: CAZyme
Location: 60310 - 62187 (-)
Type: CAZyme
Location: 60310 - 62187 (-)
Gene ID: HRGMv2_0258_19_34
Type: CAZyme
Location: 62335 - 64701 (-)
Type: CAZyme
Location: 62335 - 64701 (-)
Gene ID: HRGMv2_0258_19_35
Type: CAZyme
Location: 64725 - 67013 (-)
Type: CAZyme
Location: 64725 - 67013 (-)
Gene ID: HRGMv2_0258_19_36
Type: CAZyme
Location: 67010 - 69259 (-)
Type: CAZyme
Location: 67010 - 69259 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides goldsteinii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.