Cluster: HRGMv2_0258_CGC7
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0258
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0258_2 | HRGMv2_0258_2_23 | 34375 | 37827 | - | 1.B.14.6.1 |
| STP | HRGMv2_0258_2 | HRGMv2_0258_2_24 | 37939 | 38928 | - | FecR |
| TF | HRGMv2_0258_2 | HRGMv2_0258_2_25 | 39004 | 39579 | - | GerE |
| CAZyme | HRGMv2_0258_2 | HRGMv2_0258_2_26 | 39752 | 41569 | - | GH123 |
| pfam | HRGMv2_0258_2 | HRGMv2_0258_2_27 | 41657 | 43165 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0258_2 | HRGMv2_0258_2_28 | 43180 | 46539 | - | 1.B.14.6.1 |
| STP | HRGMv2_0258_2 | HRGMv2_0258_2_29 | 46696 | 47640 | - | FecR |
| STP | HRGMv2_0258_2 | HRGMv2_0258_2_30 | 48155 | 48823 | + | FecR |
| TC | HRGMv2_0258_2 | HRGMv2_0258_2_31 | 49042 | 52425 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0258_2 | HRGMv2_0258_2_32 | 52463 | 54091 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_0258_2 | HRGMv2_0258_2_33 | 54258 | 55622 | + | GH29 |
| TF | HRGMv2_0258_2 | HRGMv2_0258_2_34 | 55808 | 56374 | + | GerE |
| pfam | HRGMv2_0258_2 | HRGMv2_0258_2_35 | 56487 | 58352 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0258_2 | HRGMv2_0258_2_36 | 58376 | 61810 | - | 1.B.14.6.2 |
Gene ID: HRGMv2_0258_2_23
Type: TC
Location: 34375 - 37827 (-)
Type: TC
Location: 34375 - 37827 (-)
Gene ID: HRGMv2_0258_2_24
Type: STP
Location: 37939 - 38928 (-)
Type: STP
Location: 37939 - 38928 (-)
Gene ID: HRGMv2_0258_2_25
Type: TF
Location: 39004 - 39579 (-)
Type: TF
Location: 39004 - 39579 (-)
Gene ID: HRGMv2_0258_2_26
Type: CAZyme
Location: 39752 - 41569 (-)
Type: CAZyme
Location: 39752 - 41569 (-)
Gene ID: HRGMv2_0258_2_27
Type: pfam
Location: 41657 - 43165 (-)
Type: pfam
Location: 41657 - 43165 (-)
Gene ID: HRGMv2_0258_2_28
Type: TC
Location: 43180 - 46539 (-)
Type: TC
Location: 43180 - 46539 (-)
Gene ID: HRGMv2_0258_2_29
Type: STP
Location: 46696 - 47640 (-)
Type: STP
Location: 46696 - 47640 (-)
Gene ID: HRGMv2_0258_2_30
Type: STP
Location: 48155 - 48823 (+)
Type: STP
Location: 48155 - 48823 (+)
Gene ID: HRGMv2_0258_2_31
Type: TC
Location: 49042 - 52425 (+)
Type: TC
Location: 49042 - 52425 (+)
Gene ID: HRGMv2_0258_2_32
Type: pfam
Location: 52463 - 54091 (+)
Type: pfam
Location: 52463 - 54091 (+)
Gene ID: HRGMv2_0258_2_33
Type: CAZyme
Location: 54258 - 55622 (+)
Type: CAZyme
Location: 54258 - 55622 (+)
Gene ID: HRGMv2_0258_2_34
Type: TF
Location: 55808 - 56374 (+)
Type: TF
Location: 55808 - 56374 (+)
Gene ID: HRGMv2_0258_2_35
Type: pfam
Location: 56487 - 58352 (-)
Type: pfam
Location: 56487 - 58352 (-)
Gene ID: HRGMv2_0258_2_36
Type: TC
Location: 58376 - 61810 (-)
Type: TC
Location: 58376 - 61810 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides goldsteinii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.