Cluster: HRGMv2_0258_CGC63
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0258
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0258_14 | HRGMv2_0258_14_128 | 154509 | 156899 | - | 1.B.18.1.2 |
| pfam | HRGMv2_0258_14 | HRGMv2_0258_14_129 | 156896 | 158056 | - | Epimerase_2 |
| CAZyme | HRGMv2_0258_14 | HRGMv2_0258_14_130 | 158053 | 159264 | - | GT4 |
| CAZyme | HRGMv2_0258_14 | HRGMv2_0258_14_131 | 159278 | 160900 | - | PL12_3 |
| CAZyme | HRGMv2_0258_14 | HRGMv2_0258_14_132 | 160894 | 161916 | - | GT4 |
| pfam | HRGMv2_0258_14 | HRGMv2_0258_14_133 | 161927 | 162883 | - | DUF6625 |
| pfam | HRGMv2_0258_14 | HRGMv2_0258_14_134 | 162876 | 164102 | - | DUF6337 |
| CAZyme | HRGMv2_0258_14 | HRGMv2_0258_14_135 | 164099 | 165118 | - | GT113 |
| pfam | HRGMv2_0258_14 | HRGMv2_0258_14_136 | 165122 | 166216 | - | Amino_oxidase | GLF | NAD_binding_8 |
| TC | HRGMv2_0258_14 | HRGMv2_0258_14_137 | 166218 | 167675 | - | 2.A.66.2.9 |
| pfam | HRGMv2_0258_14 | HRGMv2_0258_14_138 | 167675 | 168880 | - | UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| TC | HRGMv2_0258_14 | HRGMv2_0258_14_139 | 168926 | 170023 | - | 9.B.146.1.4 |
| TC | HRGMv2_0258_14 | HRGMv2_0258_14_140 | 170957 | 172900 | + | 9.B.18.2.1 |
Gene ID: HRGMv2_0258_14_128
Type: TC
Location: 154509 - 156899 (-)
Type: TC
Location: 154509 - 156899 (-)
Gene ID: HRGMv2_0258_14_129
Type: pfam
Location: 156896 - 158056 (-)
Type: pfam
Location: 156896 - 158056 (-)
Gene ID: HRGMv2_0258_14_130
Type: CAZyme
Location: 158053 - 159264 (-)
Type: CAZyme
Location: 158053 - 159264 (-)
Gene ID: HRGMv2_0258_14_131
Type: CAZyme
Location: 159278 - 160900 (-)
Type: CAZyme
Location: 159278 - 160900 (-)
Gene ID: HRGMv2_0258_14_132
Type: CAZyme
Location: 160894 - 161916 (-)
Type: CAZyme
Location: 160894 - 161916 (-)
Gene ID: HRGMv2_0258_14_133
Type: pfam
Location: 161927 - 162883 (-)
Type: pfam
Location: 161927 - 162883 (-)
Gene ID: HRGMv2_0258_14_134
Type: pfam
Location: 162876 - 164102 (-)
Type: pfam
Location: 162876 - 164102 (-)
Gene ID: HRGMv2_0258_14_135
Type: CAZyme
Location: 164099 - 165118 (-)
Type: CAZyme
Location: 164099 - 165118 (-)
Gene ID: HRGMv2_0258_14_136
Type: pfam
Location: 165122 - 166216 (-)
Type: pfam
Location: 165122 - 166216 (-)
Gene ID: HRGMv2_0258_14_137
Type: TC
Location: 166218 - 167675 (-)
Type: TC
Location: 166218 - 167675 (-)
Gene ID: HRGMv2_0258_14_138
Type: pfam
Location: 167675 - 168880 (-)
Type: pfam
Location: 167675 - 168880 (-)
Gene ID: HRGMv2_0258_14_139
Type: TC
Location: 168926 - 170023 (-)
Type: TC
Location: 168926 - 170023 (-)
Gene ID: HRGMv2_0258_14_140
Type: TC
Location: 170957 - 172900 (+)
Type: TC
Location: 170957 - 172900 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides goldsteinii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.