Cluster: HRGMv2_0258_CGC59
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: HRGMv2_0258
- CGC Family ID: CGCFAM_00001
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0258_12 | HRGMv2_0258_12_26 | 25601 | 28678 | - | 1.B.14.6.1 |
| TF | HRGMv2_0258_12 | HRGMv2_0258_12_27 | 29295 | 33323 | + | HTH_AraC |
| CAZyme | HRGMv2_0258_12 | HRGMv2_0258_12_28 | 33363 | 34736 | - | GH109 |
| pfam | HRGMv2_0258_12 | HRGMv2_0258_12_29 | 34819 | 36579 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0258_12 | HRGMv2_0258_12_30 | 36612 | 40052 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0258_12_26
Type: TC
Location: 25601 - 28678 (-)
Type: TC
Location: 25601 - 28678 (-)
Gene ID: HRGMv2_0258_12_27
Type: TF
Location: 29295 - 33323 (+)
Type: TF
Location: 29295 - 33323 (+)
Gene ID: HRGMv2_0258_12_28
Type: CAZyme
Location: 33363 - 34736 (-)
Type: CAZyme
Location: 33363 - 34736 (-)
Gene ID: HRGMv2_0258_12_29
Type: pfam
Location: 34819 - 36579 (-)
Type: pfam
Location: 34819 - 36579 (-)
Gene ID: HRGMv2_0258_12_30
Type: TC
Location: 36612 - 40052 (-)
Type: TC
Location: 36612 - 40052 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides goldsteinii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.