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Cluster: HRGMv2_0258_CGC55

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0258_11 HRGMv2_0258_11_43 66035 69355 + 1.B.14.6.1
TC HRGMv2_0258_11 HRGMv2_0258_11_44 69367 71001 + 8.A.46.3.2
CAZyme HRGMv2_0258_11 HRGMv2_0258_11_45 71013 72590 + GH30_4
CAZyme HRGMv2_0258_11 HRGMv2_0258_11_46 72901 74859 + GH97
CAZyme HRGMv2_0258_11 HRGMv2_0258_11_47 75298 78057 + GH92
CAZyme HRGMv2_0258_11 HRGMv2_0258_11_48 78150 80981 + CBM51
pfam HRGMv2_0258_11 HRGMv2_0258_11_49 81346 84336 + GH123_N
STP HRGMv2_0258_11 HRGMv2_0258_11_50 84583 87753 + TPR_1
TC HRGMv2_0258_11 HRGMv2_0258_11_51 88416 91469 + 1.B.14.6.1
TC HRGMv2_0258_11 HRGMv2_0258_11_52 91483 93027 + 8.A.46.1.3
CAZyme HRGMv2_0258_11 HRGMv2_0258_11_53 93104 96004 + GH106
CAZyme HRGMv2_0258_11 HRGMv2_0258_11_54 96096 98648 + CBM67 | GH78
CAZyme HRGMv2_0258_11 HRGMv2_0258_11_55 98700 101372 + CBM67 | GH78
CAZyme HRGMv2_0258_11 HRGMv2_0258_11_56 101381 104038 + CBM67 | GH78
CAZyme HRGMv2_0258_11 HRGMv2_0258_11_57 104151 107267 + GH106
pfam HRGMv2_0258_11 HRGMv2_0258_11_58 107388 108272 + AP_endonuc_2
CAZyme HRGMv2_0258_11 HRGMv2_0258_11_59 108277 109419 + GH43_24
TC HRGMv2_0258_11 HRGMv2_0258_11_60 109593 110483 + 2.A.115.1.1
STP HRGMv2_0258_11 HRGMv2_0258_11_61 111124 111672 + Sigma70_r2 | Sigma70_r4_2
STP HRGMv2_0258_11 HRGMv2_0258_11_62 111738 112820 + FecR
TC HRGMv2_0258_11 HRGMv2_0258_11_63 112946 116470 + 1.B.14.6.1
Gene ID: HRGMv2_0258_11_43
Type: TC
Location: 66035 - 69355 (+)
Gene ID: HRGMv2_0258_11_44
Type: TC
Location: 69367 - 71001 (+)
Gene ID: HRGMv2_0258_11_45
Type: CAZyme
Location: 71013 - 72590 (+)
Gene ID: HRGMv2_0258_11_46
Type: CAZyme
Location: 72901 - 74859 (+)
Gene ID: HRGMv2_0258_11_47
Type: CAZyme
Location: 75298 - 78057 (+)
Gene ID: HRGMv2_0258_11_48
Type: CAZyme
Location: 78150 - 80981 (+)
Gene ID: HRGMv2_0258_11_49
Type: pfam
Location: 81346 - 84336 (+)
Gene ID: HRGMv2_0258_11_50
Type: STP
Location: 84583 - 87753 (+)
Gene ID: HRGMv2_0258_11_51
Type: TC
Location: 88416 - 91469 (+)
Gene ID: HRGMv2_0258_11_52
Type: TC
Location: 91483 - 93027 (+)
Gene ID: HRGMv2_0258_11_53
Type: CAZyme
Location: 93104 - 96004 (+)
Gene ID: HRGMv2_0258_11_54
Type: CAZyme
Location: 96096 - 98648 (+)
Gene ID: HRGMv2_0258_11_55
Type: CAZyme
Location: 98700 - 101372 (+)
Gene ID: HRGMv2_0258_11_56
Type: CAZyme
Location: 101381 - 104038 (+)
Gene ID: HRGMv2_0258_11_57
Type: CAZyme
Location: 104151 - 107267 (+)
Gene ID: HRGMv2_0258_11_58
Type: pfam
Location: 107388 - 108272 (+)
Gene ID: HRGMv2_0258_11_59
Type: CAZyme
Location: 108277 - 109419 (+)
Gene ID: HRGMv2_0258_11_60
Type: TC
Location: 109593 - 110483 (+)
Gene ID: HRGMv2_0258_11_61
Type: STP
Location: 111124 - 111672 (+)
Gene ID: HRGMv2_0258_11_62
Type: STP
Location: 111738 - 112820 (+)
Gene ID: HRGMv2_0258_11_63
Type: TC
Location: 112946 - 116470 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0258_11_48 vegetarian > omnivore 2.41015 0.00750
HRGMv2_0258_11_48 vegetarian > vegan 1.63574 0.01710
HRGMv2_0258_11_49 vegetarian > omnivore 1.03249 0.01449

🧭 Explore Read Mapping of CGC

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