Cluster: HRGMv2_0258_CGC54
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0258
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0258_11 | HRGMv2_0258_11_3 | 2164 | 4191 | - | GH127 |
| CAZyme | HRGMv2_0258_11 | HRGMv2_0258_11_4 | 4206 | 7487 | - | GH106 |
| pfam | HRGMv2_0258_11 | HRGMv2_0258_11_5 | 7525 | 8373 | - | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | HRGMv2_0258_11 | HRGMv2_0258_11_6 | 8533 | 10875 | - | GH106 |
| pfam | HRGMv2_0258_11 | HRGMv2_0258_11_7 | 10885 | 12495 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0258_11 | HRGMv2_0258_11_8 | 12509 | 15832 | - | 1.B.14.6.1 |
| STP | HRGMv2_0258_11 | HRGMv2_0258_11_9 | 16040 | 16981 | - | FecR |
| TC | HRGMv2_0258_11 | HRGMv2_0258_11_10 | 17113 | 18687 | - | 3.D.10.1.4 |
| pfam | HRGMv2_0258_11 | HRGMv2_0258_11_11 | 18891 | 19586 | + | DUF3108_like |
| TF | HRGMv2_0258_11 | HRGMv2_0258_11_12 | 19675 | 23619 | - | HTH_AraC |
| TC | HRGMv2_0258_11 | HRGMv2_0258_11_13 | 23944 | 27153 | + | 1.B.14.6.1 |
Gene ID: HRGMv2_0258_11_3
Type: CAZyme
Location: 2164 - 4191 (-)
Type: CAZyme
Location: 2164 - 4191 (-)
Gene ID: HRGMv2_0258_11_4
Type: CAZyme
Location: 4206 - 7487 (-)
Type: CAZyme
Location: 4206 - 7487 (-)
Gene ID: HRGMv2_0258_11_5
Type: pfam
Location: 7525 - 8373 (-)
Type: pfam
Location: 7525 - 8373 (-)
Gene ID: HRGMv2_0258_11_6
Type: CAZyme
Location: 8533 - 10875 (-)
Type: CAZyme
Location: 8533 - 10875 (-)
Gene ID: HRGMv2_0258_11_7
Type: pfam
Location: 10885 - 12495 (-)
Type: pfam
Location: 10885 - 12495 (-)
Gene ID: HRGMv2_0258_11_8
Type: TC
Location: 12509 - 15832 (-)
Type: TC
Location: 12509 - 15832 (-)
Gene ID: HRGMv2_0258_11_9
Type: STP
Location: 16040 - 16981 (-)
Type: STP
Location: 16040 - 16981 (-)
Gene ID: HRGMv2_0258_11_10
Type: TC
Location: 17113 - 18687 (-)
Type: TC
Location: 17113 - 18687 (-)
Gene ID: HRGMv2_0258_11_11
Type: pfam
Location: 18891 - 19586 (+)
Type: pfam
Location: 18891 - 19586 (+)
Gene ID: HRGMv2_0258_11_12
Type: TF
Location: 19675 - 23619 (-)
Type: TF
Location: 19675 - 23619 (-)
Gene ID: HRGMv2_0258_11_13
Type: TC
Location: 23944 - 27153 (+)
Type: TC
Location: 23944 - 27153 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides goldsteinii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.