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Cluster: HRGMv2_0258_CGC46

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0258_9 HRGMv2_0258_9_92 132112 132954 + 1.A.23.2.1
pfam HRGMv2_0258_9 HRGMv2_0258_9_93 133186 135399 - TGS | RelA_SpoT | ACT_4 | HD_4 | RelA_AH_RIS
pfam HRGMv2_0258_9 HRGMv2_0258_9_94 135576 137096 + DUF4301
CAZyme HRGMv2_0258_9 HRGMv2_0258_9_95 137176 138489 - GH177
pfam HRGMv2_0258_9 HRGMv2_0258_9_96 138682 139776 + PCMD
pfam HRGMv2_0258_9 HRGMv2_0258_9_97 139789 140574 + OMP_b-brl_2
CAZyme HRGMv2_0258_9 HRGMv2_0258_9_98 140698 142047 + GH109
TF HRGMv2_0258_9 HRGMv2_0258_9_99 142214 146182 - HTH_AraC
TC HRGMv2_0258_9 HRGMv2_0258_9_100 146457 149651 + 1.B.14.6.2
Gene ID: HRGMv2_0258_9_92
Type: TC
Location: 132112 - 132954 (+)
Gene ID: HRGMv2_0258_9_93
Type: pfam
Location: 133186 - 135399 (-)
Gene ID: HRGMv2_0258_9_94
Type: pfam
Location: 135576 - 137096 (+)
Gene ID: HRGMv2_0258_9_95
Type: CAZyme
Location: 137176 - 138489 (-)
Gene ID: HRGMv2_0258_9_96
Type: pfam
Location: 138682 - 139776 (+)
Gene ID: HRGMv2_0258_9_97
Type: pfam
Location: 139789 - 140574 (+)
Gene ID: HRGMv2_0258_9_98
Type: CAZyme
Location: 140698 - 142047 (+)
Gene ID: HRGMv2_0258_9_99
Type: TF
Location: 142214 - 146182 (-)
Gene ID: HRGMv2_0258_9_100
Type: TC
Location: 146457 - 149651 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0258_9_92 vegetarian > vegan 2.00135 0.01710
HRGMv2_0258_9_96 vegetarian > omnivore 2.45450 0.01449
HRGMv2_0258_9_96 vegetarian > vegan 1.17899 0.01710

🧭 Explore Read Mapping of CGC

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