Cluster: HRGMv2_0258_CGC41
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate: beta-glucan
- Genome ID: HRGMv2_0258
- CGC Family ID: CGCFAM_00083
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0258_8 | HRGMv2_0258_8_202 | 211741 | 214542 | + | GH2 |
| NULL(UNKNOWN) | HRGMv2_0258_8 | HRGMv2_0258_8_203 | 214555 | 216972 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_0258_8 | HRGMv2_0258_8_204 | 217049 | 217951 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_0258_8 | HRGMv2_0258_8_205 | 218116 | 221442 | + | 9.A.25.1.1 |
Gene ID: HRGMv2_0258_8_202
Type: CAZyme
Location: 211741 - 214542 (+)
Type: CAZyme
Location: 211741 - 214542 (+)
Gene ID: HRGMv2_0258_8_203
Type:
Location: 214555 - 216972 (+)
Type:
Location: 214555 - 216972 (+)
Gene ID: HRGMv2_0258_8_204
Type: TF
Location: 217049 - 217951 (-)
Type: TF
Location: 217049 - 217951 (-)
Gene ID: HRGMv2_0258_8_205
Type: TC
Location: 218116 - 221442 (+)
Type: TC
Location: 218116 - 221442 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides goldsteinii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0258_8_205 | vegetarian > omnivore | 1.97023 | 0.01449 |
| HRGMv2_0258_8_205 | vegetarian > vegan | 1.21305 | 0.01710 |