Cluster: HRGMv2_0258_CGC37
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0258
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0258_7 | HRGMv2_0258_7_95 | 152605 | 153324 | - | 3.A.1.132.11 |
| pfam | HRGMv2_0258_7 | HRGMv2_0258_7_96 | 153514 | 154941 | - | NPCBM_assoc |
| pfam | HRGMv2_0258_7 | HRGMv2_0258_7_97 | 155150 | 156667 | - | OEP | OEP |
| CAZyme | HRGMv2_0258_7 | HRGMv2_0258_7_98 | 156968 | 159265 | + | GH92 |
| TC | HRGMv2_0258_7 | HRGMv2_0258_7_99 | 159306 | 160550 | + | 2.A.21.9.1 |
Gene ID: HRGMv2_0258_7_95
Type: TC
Location: 152605 - 153324 (-)
Type: TC
Location: 152605 - 153324 (-)
Gene ID: HRGMv2_0258_7_96
Type: pfam
Location: 153514 - 154941 (-)
Type: pfam
Location: 153514 - 154941 (-)
Gene ID: HRGMv2_0258_7_97
Type: pfam
Location: 155150 - 156667 (-)
Type: pfam
Location: 155150 - 156667 (-)
Gene ID: HRGMv2_0258_7_98
Type: CAZyme
Location: 156968 - 159265 (+)
Type: CAZyme
Location: 156968 - 159265 (+)
Gene ID: HRGMv2_0258_7_99
Type: TC
Location: 159306 - 160550 (+)
Type: TC
Location: 159306 - 160550 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides goldsteinii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0258_7_95 | vegetarian > omnivore | 1.11505 | 0.01449 |
| HRGMv2_0258_7_95 | vegetarian > vegan | 1.59105 | 0.01710 |
| HRGMv2_0258_7_99 | vegetarian > omnivore | 1.87732 | 0.01449 |
| HRGMv2_0258_7_99 | vegetarian > vegan | 1.65953 | 0.01710 |