Cluster: HRGMv2_0258_CGC33
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0258
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0258_7 | HRGMv2_0258_7_23 | 24950 | 26959 | - | GH33 |
| pfam | HRGMv2_0258_7 | HRGMv2_0258_7_24 | 27141 | 28577 | - | Aldedh |
| CAZyme | HRGMv2_0258_7 | HRGMv2_0258_7_25 | 28763 | 30082 | - | CE7 |
| CAZyme | HRGMv2_0258_7 | HRGMv2_0258_7_26 | 30214 | 33690 | - | GH173 | GH36 |
| CAZyme | HRGMv2_0258_7 | HRGMv2_0258_7_27 | 33687 | 35813 | - | GH36 |
| pfam | HRGMv2_0258_7 | HRGMv2_0258_7_28 | 36046 | 37911 | - | SusD_RagB | SusD-like_2 | SusD-like_3 |
| TC | HRGMv2_0258_7 | HRGMv2_0258_7_29 | 37923 | 41051 | - | 1.B.14.6.1 |
| TC | HRGMv2_0258_7 | HRGMv2_0258_7_30 | 41259 | 42416 | - | 2.A.1.7.17 |
| STP | HRGMv2_0258_7 | HRGMv2_0258_7_31 | 42439 | 43017 | - | SIS |
| STP | HRGMv2_0258_7 | HRGMv2_0258_7_32 | 43032 | 44000 | - | Glucokinase |
| CAZyme | HRGMv2_0258_7 | HRGMv2_0258_7_33 | 43997 | 46399 | - | GH2 |
| CAZyme | HRGMv2_0258_7 | HRGMv2_0258_7_34 | 46421 | 49057 | - | CBM67 | GH78 |
| TF | HRGMv2_0258_7 | HRGMv2_0258_7_35 | 49118 | 50131 | - | LacI |
| pfam | HRGMv2_0258_7 | HRGMv2_0258_7_36 | 50336 | 51517 | - | OEP | OEP |
| TC | HRGMv2_0258_7 | HRGMv2_0258_7_37 | 51514 | 54594 | - | 2.A.6.1.5 |
| TC | HRGMv2_0258_7 | HRGMv2_0258_7_38 | 54696 | 55934 | - | 2.A.6.1.7 |
Gene ID: HRGMv2_0258_7_23
Type: CAZyme
Location: 24950 - 26959 (-)
Type: CAZyme
Location: 24950 - 26959 (-)
Gene ID: HRGMv2_0258_7_24
Type: pfam
Location: 27141 - 28577 (-)
Type: pfam
Location: 27141 - 28577 (-)
Gene ID: HRGMv2_0258_7_25
Type: CAZyme
Location: 28763 - 30082 (-)
Type: CAZyme
Location: 28763 - 30082 (-)
Gene ID: HRGMv2_0258_7_26
Type: CAZyme
Location: 30214 - 33690 (-)
Type: CAZyme
Location: 30214 - 33690 (-)
Gene ID: HRGMv2_0258_7_27
Type: CAZyme
Location: 33687 - 35813 (-)
Type: CAZyme
Location: 33687 - 35813 (-)
Gene ID: HRGMv2_0258_7_28
Type: pfam
Location: 36046 - 37911 (-)
Type: pfam
Location: 36046 - 37911 (-)
Gene ID: HRGMv2_0258_7_29
Type: TC
Location: 37923 - 41051 (-)
Type: TC
Location: 37923 - 41051 (-)
Gene ID: HRGMv2_0258_7_30
Type: TC
Location: 41259 - 42416 (-)
Type: TC
Location: 41259 - 42416 (-)
Gene ID: HRGMv2_0258_7_31
Type: STP
Location: 42439 - 43017 (-)
Type: STP
Location: 42439 - 43017 (-)
Gene ID: HRGMv2_0258_7_32
Type: STP
Location: 43032 - 44000 (-)
Type: STP
Location: 43032 - 44000 (-)
Gene ID: HRGMv2_0258_7_33
Type: CAZyme
Location: 43997 - 46399 (-)
Type: CAZyme
Location: 43997 - 46399 (-)
Gene ID: HRGMv2_0258_7_34
Type: CAZyme
Location: 46421 - 49057 (-)
Type: CAZyme
Location: 46421 - 49057 (-)
Gene ID: HRGMv2_0258_7_35
Type: TF
Location: 49118 - 50131 (-)
Type: TF
Location: 49118 - 50131 (-)
Gene ID: HRGMv2_0258_7_36
Type: pfam
Location: 50336 - 51517 (-)
Type: pfam
Location: 50336 - 51517 (-)
Gene ID: HRGMv2_0258_7_37
Type: TC
Location: 51514 - 54594 (-)
Type: TC
Location: 51514 - 54594 (-)
Gene ID: HRGMv2_0258_7_38
Type: TC
Location: 54696 - 55934 (-)
Type: TC
Location: 54696 - 55934 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides goldsteinii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.