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Cluster: HRGMv2_0258_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0258_6 HRGMv2_0258_6_82 120128 123436 + 1.B.14.6.1
TC HRGMv2_0258_6 HRGMv2_0258_6_83 123471 125087 + 8.A.46.1.4
pfam HRGMv2_0258_6 HRGMv2_0258_6_84 125271 126188 + DHDPS
pfam HRGMv2_0258_6 HRGMv2_0258_6_85 126194 127396 + GlcNAc_2-epim
TC HRGMv2_0258_6 HRGMv2_0258_6_86 127402 128646 + 2.A.1.14.14
CAZyme HRGMv2_0258_6 HRGMv2_0258_6_87 128710 130332 + CBM93 | GH33
CAZyme HRGMv2_0258_6 HRGMv2_0258_6_88 130338 132347 + GH20
CAZyme HRGMv2_0258_6 HRGMv2_0258_6_89 132363 134471 + CE20
Gene ID: HRGMv2_0258_6_82
Type: TC
Location: 120128 - 123436 (+)
Gene ID: HRGMv2_0258_6_83
Type: TC
Location: 123471 - 125087 (+)
Gene ID: HRGMv2_0258_6_84
Type: pfam
Location: 125271 - 126188 (+)
Gene ID: HRGMv2_0258_6_85
Type: pfam
Location: 126194 - 127396 (+)
Gene ID: HRGMv2_0258_6_86
Type: TC
Location: 127402 - 128646 (+)
Gene ID: HRGMv2_0258_6_87
Type: CAZyme
Location: 128710 - 130332 (+)
Gene ID: HRGMv2_0258_6_88
Type: CAZyme
Location: 130338 - 132347 (+)
Gene ID: HRGMv2_0258_6_89
Type: CAZyme
Location: 132363 - 134471 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0258_6_88 vegetarian > vegan 1.48786 0.01710

🧭 Explore Read Mapping of CGC

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