Cluster: HRGMv2_0258_CGC28
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: HRGMv2_0258
- CGC Family ID: CGCFAM_00001
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0258_6 | HRGMv2_0258_6_55 | 75681 | 79058 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0258_6 | HRGMv2_0258_6_56 | 79088 | 80833 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_0258_6 | HRGMv2_0258_6_57 | 80868 | 81329 | + | DUF5018-rel |
| CAZyme | HRGMv2_0258_6 | HRGMv2_0258_6_58 | 81356 | 84016 | + | GH35 |
| pfam | HRGMv2_0258_6 | HRGMv2_0258_6_59 | 84271 | 85236 | + | Bgal_small_N |
| CAZyme | HRGMv2_0258_6 | HRGMv2_0258_6_60 | 85439 | 87853 | + | GH95 |
| sulfatase | HRGMv2_0258_6 | HRGMv2_0258_6_61 | 87860 | 88816 | + | S1_8 |
| CAZyme | HRGMv2_0258_6 | HRGMv2_0258_6_62 | 88833 | 91667 | + | GH2 |
| CAZyme | HRGMv2_0258_6 | HRGMv2_0258_6_63 | 91765 | 93465 | + | GH110 |
| peptidase | HRGMv2_0258_6 | HRGMv2_0258_6_64 | 93582 | 95714 | - | S46.UPW |
| TC | HRGMv2_0258_6 | HRGMv2_0258_6_65 | 95730 | 97088 | - | 9.B.145.1.2 |
Gene ID: HRGMv2_0258_6_55
Type: TC
Location: 75681 - 79058 (+)
Type: TC
Location: 75681 - 79058 (+)
Gene ID: HRGMv2_0258_6_56
Type: pfam
Location: 79088 - 80833 (+)
Type: pfam
Location: 79088 - 80833 (+)
Gene ID: HRGMv2_0258_6_57
Type: pfam
Location: 80868 - 81329 (+)
Type: pfam
Location: 80868 - 81329 (+)
Gene ID: HRGMv2_0258_6_58
Type: CAZyme
Location: 81356 - 84016 (+)
Type: CAZyme
Location: 81356 - 84016 (+)
Gene ID: HRGMv2_0258_6_59
Type: pfam
Location: 84271 - 85236 (+)
Type: pfam
Location: 84271 - 85236 (+)
Gene ID: HRGMv2_0258_6_60
Type: CAZyme
Location: 85439 - 87853 (+)
Type: CAZyme
Location: 85439 - 87853 (+)
Gene ID: HRGMv2_0258_6_61
Type: sulfatase
Location: 87860 - 88816 (+)
Type: sulfatase
Location: 87860 - 88816 (+)
Gene ID: HRGMv2_0258_6_62
Type: CAZyme
Location: 88833 - 91667 (+)
Type: CAZyme
Location: 88833 - 91667 (+)
Gene ID: HRGMv2_0258_6_63
Type: CAZyme
Location: 91765 - 93465 (+)
Type: CAZyme
Location: 91765 - 93465 (+)
Gene ID: HRGMv2_0258_6_64
Type: peptidase
Location: 93582 - 95714 (-)
Type: peptidase
Location: 93582 - 95714 (-)
Gene ID: HRGMv2_0258_6_65
Type: TC
Location: 95730 - 97088 (-)
Type: TC
Location: 95730 - 97088 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides goldsteinii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.