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Cluster: HRGMv2_0258_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0258_5 HRGMv2_0258_5_1 423 2357 + GH133
CAZyme HRGMv2_0258_5 HRGMv2_0258_5_2 2370 3632 + GT4
CAZyme HRGMv2_0258_5 HRGMv2_0258_5_3 3663 4967 + GH57
STP HRGMv2_0258_5 HRGMv2_0258_5_4 5101 5682 + Sigma70_r2 | Sigma70_r4_2
STP HRGMv2_0258_5 HRGMv2_0258_5_5 5744 6742 + FecR
TC HRGMv2_0258_5 HRGMv2_0258_5_6 6851 10321 + 1.B.14.6.1
pfam HRGMv2_0258_5 HRGMv2_0258_5_7 10333 12135 + SusD_RagB | SusD-like_3
TC HRGMv2_0258_5 HRGMv2_0258_5_8 12157 15123 + 1.B.14.6.1
Gene ID: HRGMv2_0258_5_1
Type: CAZyme
Location: 423 - 2357 (+)
Gene ID: HRGMv2_0258_5_2
Type: CAZyme
Location: 2370 - 3632 (+)
Gene ID: HRGMv2_0258_5_3
Type: CAZyme
Location: 3663 - 4967 (+)
Gene ID: HRGMv2_0258_5_4
Type: STP
Location: 5101 - 5682 (+)
Gene ID: HRGMv2_0258_5_5
Type: STP
Location: 5744 - 6742 (+)
Gene ID: HRGMv2_0258_5_6
Type: TC
Location: 6851 - 10321 (+)
Gene ID: HRGMv2_0258_5_7
Type: pfam
Location: 10333 - 12135 (+)
Gene ID: HRGMv2_0258_5_8
Type: TC
Location: 12157 - 15123 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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