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Cluster: HRGMv2_0258_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0258_1 HRGMv2_0258_1_151 200964 201821 + 2.A.64.1.3
CAZyme HRGMv2_0258_1 HRGMv2_0258_1_152 201925 204141 + GH92
CAZyme HRGMv2_0258_1 HRGMv2_0258_1_153 204246 205109 - CE1
NULL(UNKNOWN) HRGMv2_0258_1 HRGMv2_0258_1_154 205138 205263 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0258_1 HRGMv2_0258_1_155 205247 207508 + 2.A.37.1.5
pfam HRGMv2_0258_1 HRGMv2_0258_1_156 207612 208451 + DUF5032
CAZyme HRGMv2_0258_1 HRGMv2_0258_1_157 208601 209767 + PL38
CAZyme HRGMv2_0258_1 HRGMv2_0258_1_158 209816 211060 + GH88
CAZyme HRGMv2_0258_1 HRGMv2_0258_1_159 211087 213555 + GH2
TF HRGMv2_0258_1 HRGMv2_0258_1_160 213639 217754 + HTH_AraC
TC HRGMv2_0258_1 HRGMv2_0258_1_161 217914 221051 + 1.B.14.6.1
pfam HRGMv2_0258_1 HRGMv2_0258_1_162 221076 222551 + SusD_RagB | SusD-like_3
TC HRGMv2_0258_1 HRGMv2_0258_1_163 222773 226762 + 9.A.25.1.1
CAZyme HRGMv2_0258_1 HRGMv2_0258_1_164 226770 228326 + PL29
pfam HRGMv2_0258_1 HRGMv2_0258_1_165 228477 229157 - tRNA_m1G_MT
pfam HRGMv2_0258_1 HRGMv2_0258_1_166 229328 230815 + Cytochrom_C552
TC HRGMv2_0258_1 HRGMv2_0258_1_167 230787 233069 - 2.A.21.9.2
pfam HRGMv2_0258_1 HRGMv2_0258_1_168 233350 235812 + tRNA_bind | FDX-ACB | B3_4 | B5 | tRNA_synthFbeta
pfam HRGMv2_0258_1 HRGMv2_0258_1_169 235848 236579 + Transcrip_reg | TACO1_YebC_N
TC HRGMv2_0258_1 HRGMv2_0258_1_170 236712 237452 + 1.B.63.1.6
Gene ID: HRGMv2_0258_1_151
Type: TC
Location: 200964 - 201821 (+)
Gene ID: HRGMv2_0258_1_152
Type: CAZyme
Location: 201925 - 204141 (+)
Gene ID: HRGMv2_0258_1_153
Type: CAZyme
Location: 204246 - 205109 (-)
Gene ID: HRGMv2_0258_1_154
Type:
Location: 205138 - 205263 (+)
Gene ID: HRGMv2_0258_1_155
Type: TC
Location: 205247 - 207508 (+)
Gene ID: HRGMv2_0258_1_156
Type: pfam
Location: 207612 - 208451 (+)
Gene ID: HRGMv2_0258_1_157
Type: CAZyme
Location: 208601 - 209767 (+)
Gene ID: HRGMv2_0258_1_158
Type: CAZyme
Location: 209816 - 211060 (+)
Gene ID: HRGMv2_0258_1_159
Type: CAZyme
Location: 211087 - 213555 (+)
Gene ID: HRGMv2_0258_1_160
Type: TF
Location: 213639 - 217754 (+)
Gene ID: HRGMv2_0258_1_161
Type: TC
Location: 217914 - 221051 (+)
Gene ID: HRGMv2_0258_1_162
Type: pfam
Location: 221076 - 222551 (+)
Gene ID: HRGMv2_0258_1_163
Type: TC
Location: 222773 - 226762 (+)
Gene ID: HRGMv2_0258_1_164
Type: CAZyme
Location: 226770 - 228326 (+)
Gene ID: HRGMv2_0258_1_165
Type: pfam
Location: 228477 - 229157 (-)
Gene ID: HRGMv2_0258_1_166
Type: pfam
Location: 229328 - 230815 (+)
Gene ID: HRGMv2_0258_1_167
Type: TC
Location: 230787 - 233069 (-)
Gene ID: HRGMv2_0258_1_168
Type: pfam
Location: 233350 - 235812 (+)
Gene ID: HRGMv2_0258_1_169
Type: pfam
Location: 235848 - 236579 (+)
Gene ID: HRGMv2_0258_1_170
Type: TC
Location: 236712 - 237452 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0258_1_154 vegetarian > omnivore 15.86174 0.00226
HRGMv2_0258_1_154 vegetarian > vegan 1.53635 0.01710
HRGMv2_0258_1_163 vegetarian > omnivore 1.83784 0.00750

🧭 Explore Read Mapping of CGC

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