Cluster: HRGMv2_0258_CGC14
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 8
- Substrate:
- Genome ID: HRGMv2_0258
- CGC Family ID: CGCFAM_00006
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0258_3 | HRGMv2_0258_3_191 | 228122 | 229354 | + | GT2 |
| CAZyme | HRGMv2_0258_3 | HRGMv2_0258_3_192 | 229357 | 230484 | + | GT4 |
| CAZyme | HRGMv2_0258_3 | HRGMv2_0258_3_193 | 230481 | 231662 | + | GT4 |
| pfam | HRGMv2_0258_3 | HRGMv2_0258_3_194 | 231676 | 232290 | + | Hexapep | Hexapep_2 |
| CAZyme | HRGMv2_0258_3 | HRGMv2_0258_3_195 | 232292 | 233167 | + | GT2 |
| pfam | HRGMv2_0258_3 | HRGMv2_0258_3_196 | 233142 | 234182 | + | Acyl_transf_3 |
| pfam | HRGMv2_0258_3 | HRGMv2_0258_3_197 | 234215 | 235543 | + | Beta_helix |
| TC | HRGMv2_0258_3 | HRGMv2_0258_3_198 | 235545 | 236984 | - | 2.A.66.2.6 |
| pfam | HRGMv2_0258_3 | HRGMv2_0258_3_199 | 237003 | 238787 | - | Asn_synthase | GATase_7 |
| CAZyme | HRGMv2_0258_3 | HRGMv2_0258_3_200 | 238795 | 239970 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_0258_3 | HRGMv2_0258_3_201 | 240138 | 240311 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0258_3 | HRGMv2_0258_3_202 | 240322 | 241497 | + | GT2 |
| CAZyme | HRGMv2_0258_3 | HRGMv2_0258_3_203 | 241490 | 242377 | + | GT2 |
| CAZyme | HRGMv2_0258_3 | HRGMv2_0258_3_204 | 242388 | 243575 | + | GT2 |
Gene ID: HRGMv2_0258_3_191
Type: CAZyme
Location: 228122 - 229354 (+)
Type: CAZyme
Location: 228122 - 229354 (+)
Gene ID: HRGMv2_0258_3_192
Type: CAZyme
Location: 229357 - 230484 (+)
Type: CAZyme
Location: 229357 - 230484 (+)
Gene ID: HRGMv2_0258_3_193
Type: CAZyme
Location: 230481 - 231662 (+)
Type: CAZyme
Location: 230481 - 231662 (+)
Gene ID: HRGMv2_0258_3_194
Type: pfam
Location: 231676 - 232290 (+)
Type: pfam
Location: 231676 - 232290 (+)
Gene ID: HRGMv2_0258_3_195
Type: CAZyme
Location: 232292 - 233167 (+)
Type: CAZyme
Location: 232292 - 233167 (+)
Gene ID: HRGMv2_0258_3_196
Type: pfam
Location: 233142 - 234182 (+)
Type: pfam
Location: 233142 - 234182 (+)
Gene ID: HRGMv2_0258_3_197
Type: pfam
Location: 234215 - 235543 (+)
Type: pfam
Location: 234215 - 235543 (+)
Gene ID: HRGMv2_0258_3_198
Type: TC
Location: 235545 - 236984 (-)
Type: TC
Location: 235545 - 236984 (-)
Gene ID: HRGMv2_0258_3_199
Type: pfam
Location: 237003 - 238787 (-)
Type: pfam
Location: 237003 - 238787 (-)
Gene ID: HRGMv2_0258_3_200
Type: CAZyme
Location: 238795 - 239970 (-)
Type: CAZyme
Location: 238795 - 239970 (-)
Gene ID: HRGMv2_0258_3_201
Type:
Location: 240138 - 240311 (+)
Type:
Location: 240138 - 240311 (+)
Gene ID: HRGMv2_0258_3_202
Type: CAZyme
Location: 240322 - 241497 (+)
Type: CAZyme
Location: 240322 - 241497 (+)
Gene ID: HRGMv2_0258_3_203
Type: CAZyme
Location: 241490 - 242377 (+)
Type: CAZyme
Location: 241490 - 242377 (+)
Gene ID: HRGMv2_0258_3_204
Type: CAZyme
Location: 242388 - 243575 (+)
Type: CAZyme
Location: 242388 - 243575 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides goldsteinii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.