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Cluster: HRGMv2_0258_CGC123

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0258_46 HRGMv2_0258_46_5 5045 6640 - GH20
pfam HRGMv2_0258_46 HRGMv2_0258_46_6 6806 8236 - FAD_oxidored
pfam HRGMv2_0258_46 HRGMv2_0258_46_7 8310 9965 - SusD_RagB | SusD-like_3
TC HRGMv2_0258_46 HRGMv2_0258_46_8 9977 13327 - 1.B.14.6.1
STP HRGMv2_0258_46 HRGMv2_0258_46_9 13501 14559 - FecR
TF HRGMv2_0258_46 HRGMv2_0258_46_10 14724 15287 + GerE
TC HRGMv2_0258_46 HRGMv2_0258_46_11 15950 18820 + 1.C.105.2.12
CAZyme HRGMv2_0258_46 HRGMv2_0258_46_12 18911 20197 - GH177
Gene ID: HRGMv2_0258_46_5
Type: CAZyme
Location: 5045 - 6640 (-)
Gene ID: HRGMv2_0258_46_6
Type: pfam
Location: 6806 - 8236 (-)
Gene ID: HRGMv2_0258_46_7
Type: pfam
Location: 8310 - 9965 (-)
Gene ID: HRGMv2_0258_46_8
Type: TC
Location: 9977 - 13327 (-)
Gene ID: HRGMv2_0258_46_9
Type: STP
Location: 13501 - 14559 (-)
Gene ID: HRGMv2_0258_46_10
Type: TF
Location: 14724 - 15287 (+)
Gene ID: HRGMv2_0258_46_11
Type: TC
Location: 15950 - 18820 (+)
Gene ID: HRGMv2_0258_46_12
Type: CAZyme
Location: 18911 - 20197 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0258_46_12 vegetarian > omnivore 1.41966 0.01449
HRGMv2_0258_46_12 vegetarian > vegan 2.24656 0.01063

🧭 Explore Read Mapping of CGC

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