Cluster: HRGMv2_0258_CGC122
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0258
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0258_44 | HRGMv2_0258_44_2 | 706 | 3936 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0258_44 | HRGMv2_0258_44_3 | 3950 | 5863 | + | SusD_RagB | SusD-like_3 |
| sulfatase | HRGMv2_0258_44 | HRGMv2_0258_44_4 | 6048 | 7502 | + | S1_27 |
| CAZyme | HRGMv2_0258_44 | HRGMv2_0258_44_5 | 7514 | 8911 | + | GH29 |
| CAZyme | HRGMv2_0258_44 | HRGMv2_0258_44_6 | 8908 | 10986 | + | GH36 |
Gene ID: HRGMv2_0258_44_2
Type: TC
Location: 706 - 3936 (+)
Type: TC
Location: 706 - 3936 (+)
Gene ID: HRGMv2_0258_44_3
Type: pfam
Location: 3950 - 5863 (+)
Type: pfam
Location: 3950 - 5863 (+)
Gene ID: HRGMv2_0258_44_4
Type: sulfatase
Location: 6048 - 7502 (+)
Type: sulfatase
Location: 6048 - 7502 (+)
Gene ID: HRGMv2_0258_44_5
Type: CAZyme
Location: 7514 - 8911 (+)
Type: CAZyme
Location: 7514 - 8911 (+)
Gene ID: HRGMv2_0258_44_6
Type: CAZyme
Location: 8908 - 10986 (+)
Type: CAZyme
Location: 8908 - 10986 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides goldsteinii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0258_44_4 | vegetarian > omnivore | 1.27108 | 0.01449 |
| HRGMv2_0258_44_5 | vegetarian > omnivore | 1.83017 | 0.01449 |
| HRGMv2_0258_44_5 | vegetarian > vegan | 1.50545 | 0.01710 |