Cluster: HRGMv2_0258_CGC113
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0258
- CGC Family ID: CGCFAM_02543
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0258_36 | HRGMv2_0258_36_18 | 16276 | 18198 | - | 9.B.18.2.1 |
| pfam | HRGMv2_0258_36 | HRGMv2_0258_36_19 | 18620 | 20185 | - | PDDEXK_9 | AAA-ATPase_like |
| CAZyme | HRGMv2_0258_36 | HRGMv2_0258_36_20 | 20375 | 22657 | - | GH92 |
| CAZyme | HRGMv2_0258_36 | HRGMv2_0258_36_21 | 22678 | 24993 | - | GH92 |
| CAZyme | HRGMv2_0258_36 | HRGMv2_0258_36_22 | 25467 | 28364 | - | GH38 |
| TC | HRGMv2_0258_36 | HRGMv2_0258_36_23 | 28371 | 29516 | - | 2.A.1.7.16 |
| CAZyme | HRGMv2_0258_36 | HRGMv2_0258_36_24 | 29533 | 31905 | - | GH92 |
| sulfatase | HRGMv2_0258_36 | HRGMv2_0258_36_25 | 31927 | 33012 | - | S1_7 |
| NULL(UNKNOWN) | HRGMv2_0258_36 | HRGMv2_0258_36_26 | 33044 | 34795 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0258_36 | HRGMv2_0258_36_27 | 34996 | 36294 | - | GH78 |
| peptidase | HRGMv2_0258_36 | HRGMv2_0258_36_28 | 36619 | 42153 | - | I39.UPW |
| NULL(UNKNOWN) | HRGMv2_0258_36 | HRGMv2_0258_36_29 | 42307 | 42414 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0258_36 | HRGMv2_0258_36_30 | 42434 | 44764 | + | GT51 |
Gene ID: HRGMv2_0258_36_18
Type: TC
Location: 16276 - 18198 (-)
Type: TC
Location: 16276 - 18198 (-)
Gene ID: HRGMv2_0258_36_19
Type: pfam
Location: 18620 - 20185 (-)
Type: pfam
Location: 18620 - 20185 (-)
Gene ID: HRGMv2_0258_36_20
Type: CAZyme
Location: 20375 - 22657 (-)
Type: CAZyme
Location: 20375 - 22657 (-)
Gene ID: HRGMv2_0258_36_21
Type: CAZyme
Location: 22678 - 24993 (-)
Type: CAZyme
Location: 22678 - 24993 (-)
Gene ID: HRGMv2_0258_36_22
Type: CAZyme
Location: 25467 - 28364 (-)
Type: CAZyme
Location: 25467 - 28364 (-)
Gene ID: HRGMv2_0258_36_23
Type: TC
Location: 28371 - 29516 (-)
Type: TC
Location: 28371 - 29516 (-)
Gene ID: HRGMv2_0258_36_24
Type: CAZyme
Location: 29533 - 31905 (-)
Type: CAZyme
Location: 29533 - 31905 (-)
Gene ID: HRGMv2_0258_36_25
Type: sulfatase
Location: 31927 - 33012 (-)
Type: sulfatase
Location: 31927 - 33012 (-)
Gene ID: HRGMv2_0258_36_26
Type:
Location: 33044 - 34795 (-)
Type:
Location: 33044 - 34795 (-)
Gene ID: HRGMv2_0258_36_27
Type: CAZyme
Location: 34996 - 36294 (-)
Type: CAZyme
Location: 34996 - 36294 (-)
Gene ID: HRGMv2_0258_36_28
Type: peptidase
Location: 36619 - 42153 (-)
Type: peptidase
Location: 36619 - 42153 (-)
Gene ID: HRGMv2_0258_36_29
Type:
Location: 42307 - 42414 (+)
Type:
Location: 42307 - 42414 (+)
Gene ID: HRGMv2_0258_36_30
Type: CAZyme
Location: 42434 - 44764 (+)
Type: CAZyme
Location: 42434 - 44764 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides goldsteinii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0258_36_24 | vegetarian > vegan | 2.12868 | 0.01710 |
| HRGMv2_0258_36_28 | vegetarian > vegan | 1.42981 | 0.01710 |