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Cluster: HRGMv2_0258_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0258_3 HRGMv2_0258_3_83 89749 90822 - 9.B.18.2.1
TC HRGMv2_0258_3 HRGMv2_0258_3_84 91050 91655 - 9.B.18.1.3
pfam HRGMv2_0258_3 HRGMv2_0258_3_85 91678 92547 - 2-Hacid_dh | AlaDh_PNT_C | 2-Hacid_dh_C | NAD_binding_2
pfam HRGMv2_0258_3 HRGMv2_0258_3_86 92995 93828 - HpcH_HpaI
CAZyme HRGMv2_0258_3 HRGMv2_0258_3_87 93838 94998 - GT4
pfam HRGMv2_0258_3 HRGMv2_0258_3_88 95009 95872 - 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind
NULL(UNKNOWN) HRGMv2_0258_3 HRGMv2_0258_3_89 95874 97160 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0258_3 HRGMv2_0258_3_90 97157 98128 - GT2
CAZyme HRGMv2_0258_3 HRGMv2_0258_3_91 98178 99392 - GT4
Gene ID: HRGMv2_0258_3_83
Type: TC
Location: 89749 - 90822 (-)
Gene ID: HRGMv2_0258_3_84
Type: TC
Location: 91050 - 91655 (-)
Gene ID: HRGMv2_0258_3_85
Type: pfam
Location: 91678 - 92547 (-)
Gene ID: HRGMv2_0258_3_86
Type: pfam
Location: 92995 - 93828 (-)
Gene ID: HRGMv2_0258_3_87
Type: CAZyme
Location: 93838 - 94998 (-)
Gene ID: HRGMv2_0258_3_88
Type: pfam
Location: 95009 - 95872 (-)
Gene ID: HRGMv2_0258_3_89
Type:
Location: 95874 - 97160 (-)
Gene ID: HRGMv2_0258_3_90
Type: CAZyme
Location: 97157 - 98128 (-)
Gene ID: HRGMv2_0258_3_91
Type: CAZyme
Location: 98178 - 99392 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0258_3_83 vegetarian > vegan 1.49050 0.01710

🧭 Explore Read Mapping of CGC

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