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Cluster: HRGMv2_0258_CGC106

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0258_31 HRGMv2_0258_31_2 1264 2100 + 1.B.18.3.3
pfam HRGMv2_0258_31 HRGMv2_0258_31_3 2111 3706 + Wzz
CAZyme HRGMv2_0258_31 HRGMv2_0258_31_4 3804 4814 + GT4
pfam HRGMv2_0258_31 HRGMv2_0258_31_5 4837 5898 + Glyco_trans_1_4
TC HRGMv2_0258_31 HRGMv2_0258_31_6 5909 7165 + 2.A.66.2.10
pfam HRGMv2_0258_31 HRGMv2_0258_31_7 7155 7982 + LicD | LicD
CAZyme HRGMv2_0258_31 HRGMv2_0258_31_8 8071 9171 - GT4
pfam HRGMv2_0258_31 HRGMv2_0258_31_9 9168 10250 - Radical_SAM | SPASM
CAZyme HRGMv2_0258_31 HRGMv2_0258_31_10 10240 11415 - GT4
Gene ID: HRGMv2_0258_31_2
Type: TC
Location: 1264 - 2100 (+)
Gene ID: HRGMv2_0258_31_3
Type: pfam
Location: 2111 - 3706 (+)
Gene ID: HRGMv2_0258_31_4
Type: CAZyme
Location: 3804 - 4814 (+)
Gene ID: HRGMv2_0258_31_5
Type: pfam
Location: 4837 - 5898 (+)
Gene ID: HRGMv2_0258_31_6
Type: TC
Location: 5909 - 7165 (+)
Gene ID: HRGMv2_0258_31_7
Type: pfam
Location: 7155 - 7982 (+)
Gene ID: HRGMv2_0258_31_8
Type: CAZyme
Location: 8071 - 9171 (-)
Gene ID: HRGMv2_0258_31_9
Type: pfam
Location: 9168 - 10250 (-)
Gene ID: HRGMv2_0258_31_10
Type: CAZyme
Location: 10240 - 11415 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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