Cluster: HRGMv2_0258_CGC103
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0258
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0258_30 | HRGMv2_0258_30_22 | 16445 | 17392 | + | 2.A.19.5.2 |
| pfam | HRGMv2_0258_30 | HRGMv2_0258_30_23 | 17473 | 18174 | + | DUF5020 |
| TC | HRGMv2_0258_30 | HRGMv2_0258_30_24 | 18185 | 19480 | + | 2.A.40.7.6 |
| peptidase | HRGMv2_0258_30 | HRGMv2_0258_30_25 | 19566 | 21608 | - | M13.017 |
| CAZyme | HRGMv2_0258_30 | HRGMv2_0258_30_26 | 21765 | 24104 | + | GH35 |
Gene ID: HRGMv2_0258_30_22
Type: TC
Location: 16445 - 17392 (+)
Type: TC
Location: 16445 - 17392 (+)
Gene ID: HRGMv2_0258_30_23
Type: pfam
Location: 17473 - 18174 (+)
Type: pfam
Location: 17473 - 18174 (+)
Gene ID: HRGMv2_0258_30_24
Type: TC
Location: 18185 - 19480 (+)
Type: TC
Location: 18185 - 19480 (+)
Gene ID: HRGMv2_0258_30_25
Type: peptidase
Location: 19566 - 21608 (-)
Type: peptidase
Location: 19566 - 21608 (-)
Gene ID: HRGMv2_0258_30_26
Type: CAZyme
Location: 21765 - 24104 (+)
Type: CAZyme
Location: 21765 - 24104 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides goldsteinii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0258_30_23 | vegetarian > omnivore | 1.00716 | 0.01449 |
| HRGMv2_0258_30_23 | vegetarian > vegan | 1.12920 | 0.01710 |
| HRGMv2_0258_30_24 | vegetarian > omnivore | 1.10010 | 0.01449 |