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Cluster: HRGMv2_0252_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0252_5 HRGMv2_0252_5_77 104411 105478 + 3.A.1.132.3
NULL(UNKNOWN) HRGMv2_0252_5 HRGMv2_0252_5_78 105603 107180 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0252_5 HRGMv2_0252_5_79 107187 108455 - SusE
TC HRGMv2_0252_5 HRGMv2_0252_5_80 108478 110160 - 8.A.46.1.6
TC HRGMv2_0252_5 HRGMv2_0252_5_81 110172 113198 - 1.B.14.6.1
TF HRGMv2_0252_5 HRGMv2_0252_5_82 113333 117433 - HTH_AraC
TC HRGMv2_0252_5 HRGMv2_0252_5_83 117430 119997 - 9.B.144.1.4
CAZyme HRGMv2_0252_5 HRGMv2_0252_5_84 120000 121313 - GT4
pfam HRGMv2_0252_5 HRGMv2_0252_5_85 121367 124003 + MutS_V | MutS_I | MutS_II | MutS_IV | MutS_III
CAZyme HRGMv2_0252_5 HRGMv2_0252_5_86 124019 126007 + GH97
pfam HRGMv2_0252_5 HRGMv2_0252_5_87 126017 126928 + Exo_endo_phos
pfam HRGMv2_0252_5 HRGMv2_0252_5_88 126958 127482 + DHFR_1
TC HRGMv2_0252_5 HRGMv2_0252_5_89 127587 128828 + 2.A.22.5.3
TC HRGMv2_0252_5 HRGMv2_0252_5_90 128834 130186 + 2.A.22.5.3
Gene ID: HRGMv2_0252_5_77
Type: TC
Location: 104411 - 105478 (+)
Gene ID: HRGMv2_0252_5_78
Type:
Location: 105603 - 107180 (-)
Gene ID: HRGMv2_0252_5_79
Type: pfam
Location: 107187 - 108455 (-)
Gene ID: HRGMv2_0252_5_80
Type: TC
Location: 108478 - 110160 (-)
Gene ID: HRGMv2_0252_5_81
Type: TC
Location: 110172 - 113198 (-)
Gene ID: HRGMv2_0252_5_82
Type: TF
Location: 113333 - 117433 (-)
Gene ID: HRGMv2_0252_5_83
Type: TC
Location: 117430 - 119997 (-)
Gene ID: HRGMv2_0252_5_84
Type: CAZyme
Location: 120000 - 121313 (-)
Gene ID: HRGMv2_0252_5_85
Type: pfam
Location: 121367 - 124003 (+)
Gene ID: HRGMv2_0252_5_86
Type: CAZyme
Location: 124019 - 126007 (+)
Gene ID: HRGMv2_0252_5_87
Type: pfam
Location: 126017 - 126928 (+)
Gene ID: HRGMv2_0252_5_88
Type: pfam
Location: 126958 - 127482 (+)
Gene ID: HRGMv2_0252_5_89
Type: TC
Location: 127587 - 128828 (+)
Gene ID: HRGMv2_0252_5_90
Type: TC
Location: 128834 - 130186 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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