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Cluster: HRGMv2_0250_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0250_24 HRGMv2_0250_24_2 986 3028 - GH13_6
CAZyme HRGMv2_0250_24 HRGMv2_0250_24_3 3047 4960 - GH13_46
CAZyme HRGMv2_0250_24 HRGMv2_0250_24_4 5010 6926 - GH13_14
CAZyme HRGMv2_0250_24 HRGMv2_0250_24_5 6966 9107 - GH97
CAZyme HRGMv2_0250_24 HRGMv2_0250_24_6 9118 11811 - GH77
TC HRGMv2_0250_24 HRGMv2_0250_24_7 11808 13136 - 2.A.2.6.2
TF HRGMv2_0250_24 HRGMv2_0250_24_8 13343 14368 - LacI
NULL(UNKNOWN) HRGMv2_0250_24 HRGMv2_0250_24_9 14416 14655 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0250_24 HRGMv2_0250_24_10 14701 17715 + 1.B.14.6.1
TC HRGMv2_0250_24 HRGMv2_0250_24_11 17766 19475 + 8.A.46.1.1
Gene ID: HRGMv2_0250_24_2
Type: CAZyme
Location: 986 - 3028 (-)
Gene ID: HRGMv2_0250_24_3
Type: CAZyme
Location: 3047 - 4960 (-)
Gene ID: HRGMv2_0250_24_4
Type: CAZyme
Location: 5010 - 6926 (-)
Gene ID: HRGMv2_0250_24_5
Type: CAZyme
Location: 6966 - 9107 (-)
Gene ID: HRGMv2_0250_24_6
Type: CAZyme
Location: 9118 - 11811 (-)
Gene ID: HRGMv2_0250_24_7
Type: TC
Location: 11808 - 13136 (-)
Gene ID: HRGMv2_0250_24_8
Type: TF
Location: 13343 - 14368 (-)
Gene ID: HRGMv2_0250_24_9
Type:
Location: 14416 - 14655 (+)
Gene ID: HRGMv2_0250_24_10
Type: TC
Location: 14701 - 17715 (+)
Gene ID: HRGMv2_0250_24_11
Type: TC
Location: 17766 - 19475 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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