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Cluster: HRGMv2_0250_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0250_9 HRGMv2_0250_9_101 134714 135313 + 2.A.51.1.5
TC HRGMv2_0250_9 HRGMv2_0250_9_102 135319 135891 + 2.A.51.1.6
pfam HRGMv2_0250_9 HRGMv2_0250_9_103 135971 136864 + EamA | EamA
CAZyme HRGMv2_0250_9 HRGMv2_0250_9_104 136854 137873 + GH43_5
CAZyme HRGMv2_0250_9 HRGMv2_0250_9_105 137969 139558 + GH27
TC HRGMv2_0250_9 HRGMv2_0250_9_106 139766 140614 + 1.A.30.1.4
pfam HRGMv2_0250_9 HRGMv2_0250_9_107 140733 141296 - PAP2
pfam HRGMv2_0250_9 HRGMv2_0250_9_108 141325 142026 - RadC | UPF0758_N
CAZyme HRGMv2_0250_9 HRGMv2_0250_9_109 142046 143104 - GT2
pfam HRGMv2_0250_9 HRGMv2_0250_9_110 143251 143823 - EFP | EFP_N | Elong-fact-P_C
pfam HRGMv2_0250_9 HRGMv2_0250_9_111 144029 144184 + Ribosomal_L34
CAZyme HRGMv2_0250_9 HRGMv2_0250_9_112 144305 145210 - GH16_3
pfam HRGMv2_0250_9 HRGMv2_0250_9_113 145348 146340 + Thioredoxin | AhpC-TSA | Redoxin | Thioredoxin_2 | Thioredoxin_8
TC HRGMv2_0250_9 HRGMv2_0250_9_114 146356 147075 + 3.A.1.122.14
TC HRGMv2_0250_9 HRGMv2_0250_9_115 147118 148377 + 3.A.1.122.2
TC HRGMv2_0250_9 HRGMv2_0250_9_116 148374 149675 + 3.A.1.122.1
pfam HRGMv2_0250_9 HRGMv2_0250_9_117 149772 150887 + HlyD_3 | HlyD_D23
pfam HRGMv2_0250_9 HRGMv2_0250_9_118 150901 151677 + S6PP | Hydrolase_3
TC HRGMv2_0250_9 HRGMv2_0250_9_119 151873 152805 + 2.A.115.1.5
TC HRGMv2_0250_9 HRGMv2_0250_9_120 153298 154998 - 2.A.53.3.9
Gene ID: HRGMv2_0250_9_101
Type: TC
Location: 134714 - 135313 (+)
Gene ID: HRGMv2_0250_9_102
Type: TC
Location: 135319 - 135891 (+)
Gene ID: HRGMv2_0250_9_103
Type: pfam
Location: 135971 - 136864 (+)
Gene ID: HRGMv2_0250_9_104
Type: CAZyme
Location: 136854 - 137873 (+)
Gene ID: HRGMv2_0250_9_105
Type: CAZyme
Location: 137969 - 139558 (+)
Gene ID: HRGMv2_0250_9_106
Type: TC
Location: 139766 - 140614 (+)
Gene ID: HRGMv2_0250_9_107
Type: pfam
Location: 140733 - 141296 (-)
Gene ID: HRGMv2_0250_9_108
Type: pfam
Location: 141325 - 142026 (-)
Gene ID: HRGMv2_0250_9_109
Type: CAZyme
Location: 142046 - 143104 (-)
Gene ID: HRGMv2_0250_9_110
Type: pfam
Location: 143251 - 143823 (-)
Gene ID: HRGMv2_0250_9_111
Type: pfam
Location: 144029 - 144184 (+)
Gene ID: HRGMv2_0250_9_112
Type: CAZyme
Location: 144305 - 145210 (-)
Gene ID: HRGMv2_0250_9_113
Type: pfam
Location: 145348 - 146340 (+)
Gene ID: HRGMv2_0250_9_114
Type: TC
Location: 146356 - 147075 (+)
Gene ID: HRGMv2_0250_9_115
Type: TC
Location: 147118 - 148377 (+)
Gene ID: HRGMv2_0250_9_116
Type: TC
Location: 148374 - 149675 (+)
Gene ID: HRGMv2_0250_9_117
Type: pfam
Location: 149772 - 150887 (+)
Gene ID: HRGMv2_0250_9_118
Type: pfam
Location: 150901 - 151677 (+)
Gene ID: HRGMv2_0250_9_119
Type: TC
Location: 151873 - 152805 (+)
Gene ID: HRGMv2_0250_9_120
Type: TC
Location: 153298 - 154998 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0250_9_120 vegetarian > vegan 1.05199 0.03558

🧭 Explore Read Mapping of CGC

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