Cluster: HRGMv2_0250_CGC34
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 10
- Substrate:
- Genome ID: HRGMv2_0250
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0250_113 | HRGMv2_0250_113_5 | 5840 | 8701 | + | CBM62 |
| CAZyme | HRGMv2_0250_113 | HRGMv2_0250_113_6 | 8722 | 10056 | + | GH28 |
| pfam | HRGMv2_0250_113 | HRGMv2_0250_113_7 | 10373 | 11530 | - | Ribonuc_L-PSP |
| TC | HRGMv2_0250_113 | HRGMv2_0250_113_8 | 11579 | 13783 | - | 9.B.14.3.1 |
| peptidase | HRGMv2_0250_113 | HRGMv2_0250_113_9 | 13878 | 15317 | - | S09.UPW |
| CAZyme | HRGMv2_0250_113 | HRGMv2_0250_113_10 | 15429 | 19889 | - | PL11_1 |
| CAZyme | HRGMv2_0250_113 | HRGMv2_0250_113_11 | 19980 | 21221 | - | CE12 |
| CAZyme | HRGMv2_0250_113 | HRGMv2_0250_113_12 | 21253 | 22572 | - | GH28 |
| CAZyme | HRGMv2_0250_113 | HRGMv2_0250_113_13 | 22936 | 25686 | - | GH146 |
| CAZyme | HRGMv2_0250_113 | HRGMv2_0250_113_14 | 25963 | 28443 | - | GH127 |
| CAZyme | HRGMv2_0250_113 | HRGMv2_0250_113_15 | 28501 | 30519 | - | GH97 |
| pfam | HRGMv2_0250_113 | HRGMv2_0250_113_16 | 30982 | 32487 | + | Gln-synt_C | Gln-synt_N |
| pfam | HRGMv2_0250_113 | HRGMv2_0250_113_17 | 33135 | 33578 | + | HSP20 |
| CAZyme | HRGMv2_0250_113 | HRGMv2_0250_113_18 | 33644 | 36811 | - | GH146 |
| CAZyme | HRGMv2_0250_113 | HRGMv2_0250_113_19 | 36958 | 39786 | - | GH43_19 | GH43_29 | GH43_34 |
Gene ID: HRGMv2_0250_113_5
Type: CAZyme
Location: 5840 - 8701 (+)
Type: CAZyme
Location: 5840 - 8701 (+)
Gene ID: HRGMv2_0250_113_6
Type: CAZyme
Location: 8722 - 10056 (+)
Type: CAZyme
Location: 8722 - 10056 (+)
Gene ID: HRGMv2_0250_113_7
Type: pfam
Location: 10373 - 11530 (-)
Type: pfam
Location: 10373 - 11530 (-)
Gene ID: HRGMv2_0250_113_8
Type: TC
Location: 11579 - 13783 (-)
Type: TC
Location: 11579 - 13783 (-)
Gene ID: HRGMv2_0250_113_9
Type: peptidase
Location: 13878 - 15317 (-)
Type: peptidase
Location: 13878 - 15317 (-)
Gene ID: HRGMv2_0250_113_10
Type: CAZyme
Location: 15429 - 19889 (-)
Type: CAZyme
Location: 15429 - 19889 (-)
Gene ID: HRGMv2_0250_113_11
Type: CAZyme
Location: 19980 - 21221 (-)
Type: CAZyme
Location: 19980 - 21221 (-)
Gene ID: HRGMv2_0250_113_12
Type: CAZyme
Location: 21253 - 22572 (-)
Type: CAZyme
Location: 21253 - 22572 (-)
Gene ID: HRGMv2_0250_113_13
Type: CAZyme
Location: 22936 - 25686 (-)
Type: CAZyme
Location: 22936 - 25686 (-)
Gene ID: HRGMv2_0250_113_14
Type: CAZyme
Location: 25963 - 28443 (-)
Type: CAZyme
Location: 25963 - 28443 (-)
Gene ID: HRGMv2_0250_113_15
Type: CAZyme
Location: 28501 - 30519 (-)
Type: CAZyme
Location: 28501 - 30519 (-)
Gene ID: HRGMv2_0250_113_16
Type: pfam
Location: 30982 - 32487 (+)
Type: pfam
Location: 30982 - 32487 (+)
Gene ID: HRGMv2_0250_113_17
Type: pfam
Location: 33135 - 33578 (+)
Type: pfam
Location: 33135 - 33578 (+)
Gene ID: HRGMv2_0250_113_18
Type: CAZyme
Location: 33644 - 36811 (-)
Type: CAZyme
Location: 33644 - 36811 (-)
Gene ID: HRGMv2_0250_113_19
Type: CAZyme
Location: 36958 - 39786 (-)
Type: CAZyme
Location: 36958 - 39786 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0250_113_17 | vegetarian > omnivore | 1.26613 | 0.01681 |
| HRGMv2_0250_113_17 | vegetarian > vegan | 1.77807 | 0.00385 |