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Cluster: HRGMv2_0250_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0250_3 HRGMv2_0250_3_1 1392 2279 - GT2
CAZyme HRGMv2_0250_3 HRGMv2_0250_3_2 2279 3109 - GT2
CAZyme HRGMv2_0250_3 HRGMv2_0250_3_3 3229 3729 - GT4
CAZyme HRGMv2_0250_3 HRGMv2_0250_3_4 4374 5519 - GT4
TC HRGMv2_0250_3 HRGMv2_0250_3_5 5544 6608 - 9.B.183.1.7
CAZyme HRGMv2_0250_3 HRGMv2_0250_3_6 6614 7603 - GT2
pfam HRGMv2_0250_3 HRGMv2_0250_3_7 7650 8555 - PS_pyruv_trans
pfam HRGMv2_0250_3 HRGMv2_0250_3_8 8552 9709 - Epimerase_2
CAZyme HRGMv2_0250_3 HRGMv2_0250_3_9 9714 10499 - GT32
CAZyme HRGMv2_0250_3 HRGMv2_0250_3_10 10507 11418 - GT2
CAZyme HRGMv2_0250_3 HRGMv2_0250_3_11 11415 12512 - GT2
Gene ID: HRGMv2_0250_3_1
Type: CAZyme
Location: 1392 - 2279 (-)
Gene ID: HRGMv2_0250_3_2
Type: CAZyme
Location: 2279 - 3109 (-)
Gene ID: HRGMv2_0250_3_3
Type: CAZyme
Location: 3229 - 3729 (-)
Gene ID: HRGMv2_0250_3_4
Type: CAZyme
Location: 4374 - 5519 (-)
Gene ID: HRGMv2_0250_3_5
Type: TC
Location: 5544 - 6608 (-)
Gene ID: HRGMv2_0250_3_6
Type: CAZyme
Location: 6614 - 7603 (-)
Gene ID: HRGMv2_0250_3_7
Type: pfam
Location: 7650 - 8555 (-)
Gene ID: HRGMv2_0250_3_8
Type: pfam
Location: 8552 - 9709 (-)
Gene ID: HRGMv2_0250_3_9
Type: CAZyme
Location: 9714 - 10499 (-)
Gene ID: HRGMv2_0250_3_10
Type: CAZyme
Location: 10507 - 11418 (-)
Gene ID: HRGMv2_0250_3_11
Type: CAZyme
Location: 11415 - 12512 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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